View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18191_high_6 (Length: 329)

Name: NF18191_high_6
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18191_high_6
NF18191_high_6
[»] chr5 (7 HSPs)
chr5 (1-219)||(13299792-13300009)
chr5 (229-323)||(13300041-13300135)
chr5 (229-323)||(13301737-13301831)
chr5 (230-307)||(8880873-8880950)
chr5 (230-307)||(32685128-32685205)
chr5 (229-303)||(5513409-5513483)
chr5 (229-284)||(39413583-39413638)
[»] chr4 (2 HSPs)
chr4 (230-307)||(25750459-25750536)
chr4 (230-304)||(45039353-45039427)
[»] chr2 (3 HSPs)
chr2 (230-307)||(5245910-5245987)
chr2 (229-305)||(27282520-27282596)
chr2 (230-303)||(43311961-43312034)
[»] chr1 (11 HSPs)
chr1 (230-305)||(2271865-2271940)
chr1 (230-304)||(2711831-2711905)
chr1 (229-303)||(17983386-17983460)
chr1 (230-304)||(34405774-34405848)
chr1 (230-303)||(34408911-34408984)
chr1 (230-305)||(5344201-5344276)
chr1 (230-307)||(2273266-2273343)
chr1 (230-305)||(31565463-31565538)
chr1 (249-304)||(25493208-25493263)
chr1 (257-304)||(34410353-34410400)
chr1 (229-303)||(42054556-42054630)
[»] scaffold0471 (1 HSPs)
scaffold0471 (230-304)||(1282-1356)
[»] chr8 (2 HSPs)
chr8 (230-304)||(36111409-36111483)
chr8 (248-304)||(10436528-10436584)
[»] chr7 (2 HSPs)
chr7 (229-303)||(41294149-41294223)
chr7 (230-304)||(45940023-45940097)
[»] chr6 (1 HSPs)
chr6 (229-307)||(5635429-5635507)
[»] chr3 (1 HSPs)
chr3 (230-304)||(43559542-43559616)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 13299792 - 13300009
Alignment:
Q  1 tgatttaaataatattatagatcactgctgcgactcgtgagttgtgaattttaaatgtactttctacagtgaagtatttcattattcaaggagaactata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  13299792 tgatttaaataatattatagatcactgctgcgactcgtgagttgtgaatgt-aaatgtactttctacagtgaagtatttcattattcaaggagaactata 13299890  T
Q  101 ggtataagaatataataatactgcgtatttgttttgagcatttctatggcgccgtcagccgttaaatctttgacacgttacaaatacaaatactataaat 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13299891 agtataagaatataataatactgcgtatttgttttgagcatttctatggcgccgtcagccgttaaatctttgacacgttacaaatacaaatactataaat 13299990  T
Q  201 agtagactctaattttgat 219  Q
    |||||||||||||||||||    
T  13299991 agtagactctaattttgat 13300009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 13300041 - 13300135
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccatttatatttacatattctt 323  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13300041 ttggcccatgcaggtctcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggccatttatatttacattttctt 13300135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 13301737 - 13301831
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccatttatatttacatattctt 323  Q
    ||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13301737 ttggcccatgcaggtctcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggccatttatatttacattttctt 13301831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 8880873 - 8880950
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccattt 307  Q
    |||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8880873 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggccattt 8880950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 32685128 - 32685205
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccattt 307  Q
    |||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  32685128 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggccattt 32685205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 5513409 - 5513483
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcc 303  Q
    ||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  5513409 ttggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcc 5513483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 284
Target Start/End: Complemental strand, 39413638 - 39413583
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaa 284  Q
    |||||||||| ||||||| |||||||  |||| |||||| ||||||||||||||||    
T  39413638 ttggcccatgtaggtctcaaacctgcgaccttcgcgttaatagcacgacgctctaa 39413583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 25750536 - 25750459
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccattt 307  Q
    |||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25750536 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggccattt 25750459  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 45039427 - 45039353
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  45039427 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcca 45039353  T

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Target: chr2 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 5245987 - 5245910
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccattt 307  Q
    |||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5245987 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggccattt 5245910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 27282596 - 27282520
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccat 305  Q
    ||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27282596 ttggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggccat 27282520  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 303
Target Start/End: Original strand, 43311961 - 43312034
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcc 303  Q
    |||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  43311961 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcc 43312034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 2271940 - 2271865
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccat 305  Q
    |||||||||||||| ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2271940 tggcccatgcaggtttcgaacctgcgacctttgcgttattagcacaacgctctaaccaactgagctaatgggccat 2271865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 2711831 - 2711905
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  2711831 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcca 2711905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 17983386 - 17983460
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcc 303  Q
    ||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  17983386 ttggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcc 17983460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 34405848 - 34405774
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  34405848 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcca 34405774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 230 - 303
Target Start/End: Complemental strand, 34408984 - 34408911
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcc 303  Q
    |||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  34408984 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcc 34408911  T

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Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 230 - 305
Target Start/End: Complemental strand, 5344276 - 5344201
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccat 305  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||| || |||||||||||    
T  5344276 tggcccatgcaggtctcgaacctgcaaccttcgcgttattagcacgacgctctaacccactaagttaatgggccat 5344201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 230 - 307
Target Start/End: Complemental strand, 2273343 - 2273266
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccattt 307  Q
    ||||||||||||||||| |||||||  |||| ||||||||||||| || |||||||||||||||||||||||||||||    
T  2273343 tggcccatgcaggtctcaaacctgcgaccttcgcgttattagcacaacactctaaccaactgagctaatgggccattt 2273266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 230 - 305
Target Start/End: Original strand, 31565463 - 31565538
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccat 305  Q
    |||||||||||||| ||||||||||  ||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  31565463 tggcccatgcaggtttcgaacctgcgaccttcacgttattagcacgacgctctaaccaactaagctaatgggccat 31565538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 249 - 304
Target Start/End: Complemental strand, 25493263 - 25493208
Alignment:
Q  249 acctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  25493263 acctgcaaccttcgcgttattagcacgacgctctaaccaactgagctaataggcca 25493208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 257 - 304
Target Start/End: Complemental strand, 34410400 - 34410353
Alignment:
Q  257 cctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||    
T  34410400 ccttcgcgttattagcacgacactctaaccaactgagctaatgggcca 34410353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 42054630 - 42054556
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcc 303  Q
    ||||||||||||||||||||||||||  ||||  | |||||||||| || |||||||||| ||||||||| ||||    
T  42054630 ttggcccatgcaggtctcgaacctgcgaccttgaccttattagcaccacactctaaccaattgagctaataggcc 42054556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 1356 - 1282
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  1356 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcca 1282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 36111483 - 36111409
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  36111483 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcca 36111409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 248 - 304
Target Start/End: Complemental strand, 10436584 - 10436528
Alignment:
Q  248 aacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  10436584 aacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcca 10436528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 303
Target Start/End: Complemental strand, 41294223 - 41294149
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcc 303  Q
    ||||||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||    
T  41294223 ttggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcc 41294149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 304
Target Start/End: Original strand, 45940023 - 45940097
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  45940023 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcca 45940097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 5635429 - 5635507
Alignment:
Q  229 ttggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggccattt 307  Q
    ||||||||||||||| | ||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  5635429 ttggcccatgcaggttttgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggccattt 5635507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 43559616 - 43559542
Alignment:
Q  230 tggcccatgcaggtctcgaacctgcagcctttgcgttattagcacgacgctctaaccaactgagctaatgggcca 304  Q
    |||||||||||||| ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||    
T  43559616 tggcccatgcaggtttcgaacctgcgaccttcgcgttattagcacgacgctctaaccaactgagctaatgggcca 43559542  T

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