View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18191_low_1 (Length: 767)
Name: NF18191_low_1
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18191_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 6117190 - 6116882
Alignment:
| Q |
11 |
catcatcaaataaattaatcagaattattatgttgacaaaatcattgataaacacaccgtaattcctacaaaacgtagaatatattttcattgataaaca |
110 |
Q |
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| T |
6117190 |
catcatcaaaaaaattaatcagaattattatgttcacaaaatcattgataaacacaccgtaattcctacacaacgtagaatatattttcattgataaaca |
6117091 |
T |
|
| Q |
111 |
tacattcttttcaaatgaatgatctggatcttctgctaagactatcttagatcatgagaatctgatgtttttccaaaaacaccataatgcttaacaagtt |
210 |
Q |
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| T |
6117090 |
tacattcttttcaaatgaatgatctggatcttctgctaagactatcttagatcatgagaatctgatgcttttccaaaaacaccataatgcttaacaagtt |
6116991 |
T |
|
| Q |
211 |
tgaaacacaactggcgagagaaaataagacatgacctcaatttgaacaactagtccactatacatttttaattaaatcaattaagaataacaagtatatg |
310 |
Q |
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| T |
6116990 |
tgaaacacaactggcgagagaaaataagacatgacctcaatttgaa-----agtccactatacatttttaattaaatcaattatgaataacaagtatatg |
6116896 |
T |
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| Q |
311 |
gagttagcatcctc |
324 |
Q |
| |
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|||||||||||||| |
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| T |
6116895 |
gagttagcatcctc |
6116882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 358 - 750
Target Start/End: Complemental strand, 6116880 - 6116488
Alignment:
| Q |
358 |
gaagtggttctcttactatatcctaattttcagaagtcaattcaaactatattgaagctaagagaatcaaaacacaa--tgtgaaacagaaacaaaattc |
455 |
Q |
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| T |
6116880 |
gaagtgattctataactatgtcctatttttcaggagtcaattcaaattatattgaaattaaaagaatgaaaatacaaaatatcaagcagaaacaaaattc |
6116781 |
T |
|
| Q |
456 |
acaatagtaataaaaggttggtagtatagtaccttcactgcctcaaattttccttgaatattannnnnnngacatgtttaacttggggccagtccgctcc |
555 |
Q |
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| T |
6116780 |
acagtattagttaaaggttggtagga--gtacctttactgcctcaaattttccttcaaaattatgttttggacatgtttaacttggggccaatctactcc |
6116683 |
T |
|
| Q |
556 |
tgtttcctcctggcatcgttcaaccaagagaggacaatcccaaatttctattgtagccaatttggtaagtttaaccatttcttttggcaatgacgccaat |
655 |
Q |
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| T |
6116682 |
tgtttcactctggcatcgttcaaccaagaggggacaatcccagatttctagtgtaaccaatttgttaaggttaaccatttcttttggcaatgacgccaat |
6116583 |
T |
|
| Q |
656 |
ttatggcatcccatcatcttgatatgttgaagtgataacacgtcacatattttacttggcaaagcttttaaatcacaaccataaaccacaacttt |
750 |
Q |
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| T |
6116582 |
ttatggcatcccatcatcttgacatgctgaagtgatgacaagtcacacatcttctgtggcaaagcttgtaaatcacaaccatataccacaacttt |
6116488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 439 - 750
Target Start/End: Original strand, 6122639 - 6122950
Alignment:
| Q |
439 |
aaacagaaacaaaattcacaatagtaataaaaggttggtagtatagtaccttcactgcctcaaattttccttgaatattannnnnnngacatgtttaact |
538 |
Q |
| |
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|||||||||||||||||||| || || ||||| |||||||||| ||||||||||| |||||||||||| ||| | |||| |||||| || | |
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| T |
6122639 |
aaacagaaacaaaattcacagtattagtaaaaagttggtagtacagtaccttcaccgcctcaaattttgcttcattattctgttttggacatgagaaatt |
6122738 |
T |
|
| Q |
539 |
tggggccagtccgctcctgtttcctcctggcatcgttcaaccaagagaggacaatcccaaatttctattgtagccaatttggtaagtttaaccatttctt |
638 |
Q |
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| T |
6122739 |
tggggccaatctactcctgtttcactctggcatcgttcaactaagaggggacaatcccagatttctagtgtaaccaagttggtaagattaaccatttctt |
6122838 |
T |
|
| Q |
639 |
ttggcaatgacgccaatttatggcatcccatcatcttgatatgttgaagtgataacacgtcacatattttacttggcaaagcttttaaatcacaaccata |
738 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||||||||| |||||||| |
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| T |
6122839 |
ttggcaatgacgccagtttatggcatcccatcatcttgatatgctgaagtgataacatgtcacacattttactcggcaaagcttttaaatcgcaaccata |
6122938 |
T |
|
| Q |
739 |
aaccacaacttt |
750 |
Q |
| |
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| ||||||||| |
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| T |
6122939 |
tatcacaacttt |
6122950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 293 - 414
Target Start/End: Original strand, 6122464 - 6122589
Alignment:
| Q |
293 |
aagaataacaagtatatggagttagcatcctcaagcataa----gactaccttttcaatgactatatcagaagtggttctcttactatatcctaattttc |
388 |
Q |
| |
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|||||||||||||||||||||| | |||||||||||||| ||||| |||||||||| ||| ||||||||| |||||||||||| | || ||||| |
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| T |
6122464 |
aagaataacaagtatatggagtcggaatcctcaagcataaataagactatattttcaatgaatatttcagaagtgattctcttactatgttatatttttc |
6122563 |
T |
|
| Q |
389 |
agaagtcaattcaaactatattgaag |
414 |
Q |
| |
|
||||||||||||||||| |||||||| |
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| T |
6122564 |
agaagtcaattcaaactgtattgaag |
6122589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 6122313 - 6122404
Alignment:
| Q |
98 |
tcattgataaaca-tacattcttttcaaatgaatgatctggatcttctgctaagactatcttagatcatgagaatctgatgtttttccaaaa |
188 |
Q |
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||||||||||| | ||||||||| || ||||||||||||||| || || |||||||||| || ||||||| |||||||||||||| ||||| |
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| T |
6122313 |
tcattgataaaaaatacattcttctcgtatgaatgatctggattttatgataagactatcctacatcatgaaaatctgatgtttttgcaaaa |
6122404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 13752957 - 13752902
Alignment:
| Q |
69 |
gtaattcctacaaaacgtagaatatattttcattgataaacatacattcttttcaa |
124 |
Q |
| |
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||||||||||||||| || |||| |||||| ||||||||||||||||| ||||||| |
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| T |
13752957 |
gtaattcctacaaaaggttgaatgtattttgattgataaacatacatttttttcaa |
13752902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 211
Target Start/End: Complemental strand, 13752872 - 13752825
Alignment:
| Q |
164 |
atgagaatctgatgtttttccaaaaacaccataatgcttaacaagttt |
211 |
Q |
| |
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|||| |||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
13752872 |
atgaaaatctgatgtttttgcaaaaacaccataaagcttaacatgttt |
13752825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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