View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18191_low_10 (Length: 254)
Name: NF18191_low_10
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18191_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 722933 - 723166
Alignment:
| Q |
1 |
ttgaattctttacttatcatctcaatgcacataaggaaggccattacattgatcgattcagagatttcacgaccgagctccaaaaccaaacgaatgaata |
100 |
Q |
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| T |
722933 |
ttgaattctttacttatcatctcaatgcacataaggaaggccattacattgatcgattcagagatttcacgaccgagctccaaaaccaaacgaatgaata |
723032 |
T |
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| Q |
101 |
gttgtcgatcaatgttgtgaaacaagttgaactcttctttagtcacaatcactttgaaacctaggtctggatttggtagaatttgtggtatagtagaaga |
200 |
Q |
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| T |
723033 |
gttgtcgatcaatgttgtgaaacaagttgaactcttctttagtcacaatcactttgaaacctaggtctggatttggtagaatttgtggtatagtagaaga |
723132 |
T |
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| Q |
201 |
cattggtaattagatgattgtggtggtggtagtg |
234 |
Q |
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| T |
723133 |
cattggtaattagatgattgtggtggtggtagtg |
723166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 190
Target Start/End: Complemental strand, 17616233 - 17616083
Alignment:
| Q |
40 |
gccattacattgatcgattcagagatttcacgaccgagctccaaaaccaaacgaatgaatagttgtcgatcaatgttgtgaaacaagttgaactcttctt |
139 |
Q |
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| T |
17616233 |
gccattacacttattgattcaaagatttcacgacctagtcccacaaccaatcgaaggaactactgtcgatcaatgttgtgaaataagttgaactcttctt |
17616134 |
T |
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| Q |
140 |
tagtcacaatcactttgaaacctaggtctggatttggtagaatttgtggta |
190 |
Q |
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| T |
17616133 |
gagtcagaatcactttggaacctaggttatgatttgttagaattagtggta |
17616083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 18331606 - 18331730
Alignment:
| Q |
28 |
cacataaggaaggccattacattgatcgattcagagatttcacgaccgagctccaaaaccaaacgaatgaatagttgtcgatcaatgttgtgaaacaagt |
127 |
Q |
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| T |
18331606 |
cacatgaggaaggccattacatttattgactgagagatctcacgatcaagcgcgaccagcaaacgagtgaagagttgtcgatcaacactgtaaaacaagt |
18331705 |
T |
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| Q |
128 |
tgaactcttctttagtcacaatcac |
152 |
Q |
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| T |
18331706 |
taaattcttctttggtcacaatcac |
18331730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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