View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18191_low_3 (Length: 429)
Name: NF18191_low_3
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18191_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 277
Target Start/End: Complemental strand, 17192901 - 17192634
Alignment:
| Q |
12 |
tcatcatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacactaggt |
111 |
Q |
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| T |
17192901 |
tcataatgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacactaggt |
17192802 |
T |
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| Q |
112 |
tcacccttgtcggaattctatcaagtagcacggtcaaagcgaatgccaagaactttgacaaagc--aacatttcctaagataaccaaatacacgctcctc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17192801 |
tcacccttgtcggaattctatcaagtagcacggtcaaagcgaatgccaagaactttgacaaagcttaacatttcctaagataaccaaatacacgctcctc |
17192702 |
T |
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| Q |
210 |
cttcgagaatattataatcaattaaaaacagcctctcagatagtttataatacaaattcaccgaacaa |
277 |
Q |
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| T |
17192701 |
cttcgagaatattataattaattaaaaatagcctctcacatagtttataacacaaattcaccgaacaa |
17192634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 340 - 413
Target Start/End: Complemental strand, 17192570 - 17192498
Alignment:
| Q |
340 |
acatacctactaaattacgaaggagttcagtttcccatgcgaactctgctccacataaaactccatcttctatc |
413 |
Q |
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| T |
17192570 |
acatacctactaaattaggaaggagttcagtttcccatacagactc-gctccacataaaactccatcttctatc |
17192498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 28800739 - 28800586
Alignment:
| Q |
17 |
atgcaagaaaaggtgtaacgccgtttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacactaggttcacc |
116 |
Q |
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| T |
28800739 |
atgcaagaaaagatgtgatgtcgtttcctccacccttccgcacaacacacaattcttcgacgccttcccattcaaccctcctctagtcgcaaggttcacc |
28800640 |
T |
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| Q |
117 |
cttgtcggaattctatcaagtagcacggtcaaagcgaatgccaagaactttgac |
170 |
Q |
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| T |
28800639 |
cttgtcggaattctatcaagtagcatggtccaagcgaaaaccaagacctttgac |
28800586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 9443930 - 9444049
Alignment:
| Q |
41 |
ttcctccaccctcccacacaacacacaatttttcgatgcctccgcattcaacactcctctagacactaggttcacccttgtcggaattctatcaagtagc |
140 |
Q |
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| T |
9443930 |
ttcctccacccttctgcacaatacacaatttctcgattcctccacattcaacactcctctatacgctagattcacccttgtcagaatcctatcaagtagc |
9444029 |
T |
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| Q |
141 |
acggtcaaagcgaatgccaa |
160 |
Q |
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| T |
9444030 |
atagtccaagcgattgccaa |
9444049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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