View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18191_low_7 (Length: 294)
Name: NF18191_low_7
Description: NF18191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18191_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 568740 - 569008
Alignment:
| Q |
16 |
tgagtttcagtcagtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacattattgttgcaagtgttggaacaggttca |
115 |
Q |
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| T |
568740 |
tgagtttcagtcagtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacattattgttgcaagtgttggaacaggttca |
568839 |
T |
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| Q |
116 |
aatgctttaggtatgttccatgagtttctatcagacatagatgtgagattgattggagttgaagctgctggtttagggttagaaagtggaaaacattctt |
215 |
Q |
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| T |
568840 |
aatgctttaggtatgttccatgagtttctatcagacacagatgtgagattgattggagttgaagctgctggtttagggttagaaagtggaaaacattctt |
568939 |
T |
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| Q |
216 |
ccactttggccaaaggagaaatgggtgtttatcatggtgctatctcctatttattacaagatgatgatg |
284 |
Q |
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| T |
568940 |
ccactttaaccaaaggagaaatgggtgtttatcatggtgctatctcctatttattacaagatggtgatg |
569008 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 20172454 - 20172542
Alignment:
| Q |
17 |
gagtttcagtcagtgattgggaaagaaacaaggaaacaagcatgggaaaaatggggaggaaaaccagacattattgttgcaagtgttgg |
105 |
Q |
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| T |
20172454 |
gagtttcatgcagtgatagggaaagaaacaagaaagcaagcattggaaaaatggggagggaagccagatattctagtagcatgtgttgg |
20172542 |
T |
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