View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18192_high_10 (Length: 318)
Name: NF18192_high_10
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 148 - 303
Target Start/End: Original strand, 52404143 - 52404298
Alignment:
| Q |
148 |
agcattatatgagcttatttttgtttgacacatccatttttctaatgatatcattgttacatgtcttgtagttccgagtcaattgaagttgctaccgatc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52404143 |
agcattatatgagcttatttttgtttgacacatccatttttctaatgatatcattgttacatgtcttgtagttccgagtcaattgaagttgctaccgatc |
52404242 |
T |
|
| Q |
248 |
gacgacatattctctcccagatatggcattgttcaacatttttagctcttccatgt |
303 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52404243 |
gacgacatattttctcacagatatggcattgttcaacatttttagctcttccatgt |
52404298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 52403993 - 52404108
Alignment:
| Q |
27 |
catgttgatttactaaaacacacattacattatcataggaggagctgatcgttcctacactaatcaccaatatgagctagcttagttagttgtcaacttc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52403993 |
catgttgatttactaaaacacacattacattatcattggaatagctgatcgttcctacactaatcaccaatatgagctagcttagttagttgtcaa---c |
52404089 |
T |
|
| Q |
127 |
ataaaagaaaccatgtaca |
145 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
52404090 |
ataaaagaaaccatgtaca |
52404108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 35 - 140
Target Start/End: Original strand, 52401792 - 52401896
Alignment:
| Q |
35 |
tttactaaaacacacattacattatcataggaggagctgatcgttcctacactaatcaccaatatgagctagcttagttagttgtcaacttcataaaaga |
134 |
Q |
| |
|
||||| ||| |||||||||||| ||||||| ||||||||||| | ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
52401792 |
tttaccaaaccacacattacat-atcatagaaggagctgatcatccctacactaatcaccaagatgagctagcttcgttagttgttaacttcataaaaga |
52401890 |
T |
|
| Q |
135 |
aaccat |
140 |
Q |
| |
|
|||||| |
|
|
| T |
52401891 |
aaccat |
52401896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 148 - 298
Target Start/End: Original strand, 52401934 - 52402072
Alignment:
| Q |
148 |
agcattatatgagcttatttttgtttgacacatccatttttctaatgatatcattgttacatgtcttgtagttccgagtcaattgaagttgctaccgatc |
247 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||| |||||||||||||| |||| | |
|
|
| T |
52401934 |
agcagtatatgagcttatttttgtttgagacatccatttttctaatgatat---------atgtcttgcagttcttagtcaattgaagttactac----c |
52402020 |
T |
|
| Q |
248 |
gacgacatattctctcccagatatggcattgttcaaca-tttttagctcttc |
298 |
Q |
| |
|
||| |||||||||||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
52402021 |
gacaacatattctctcaaagatacggcattgttcaacattttttagctcttc |
52402072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University