View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18192_high_17 (Length: 206)

Name: NF18192_high_17
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18192_high_17
NF18192_high_17
[»] chr6 (2 HSPs)
chr6 (105-196)||(34361320-34361411)
chr6 (1-61)||(34361213-34361273)
[»] chr7 (1 HSPs)
chr7 (5-65)||(12118356-12118416)
[»] chr4 (1 HSPs)
chr4 (5-65)||(37166992-37167052)


Alignment Details
Target: chr6 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 105 - 196
Target Start/End: Original strand, 34361320 - 34361411
Alignment:
Q  105 gtttattatgttcacacgtatccgagacccagacacatgcatccaatggtttttaatacaaaacttactccataaaactactcatgcttgct 196  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  34361320 gtttattatgttcacacctatccgacacccagacacatgcatccaatggtttttaatacaaaacttactccataaaactactaatgcatgct 34361411  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34361213 - 34361273
Alignment:
Q  1 catgtttaccatcaggtgcctgtgttactccttacaccttcacaactgccattgatccaga 61  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34361213 catgtttaccatcaggtgcctgtgttactccttataccttcacaactgccattgatccaga 34361273  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 12118416 - 12118356
Alignment:
Q  5 tttaccatcaggtgcctgtgttactccttacaccttcacaactgccattgatccagagaag 65  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||||||||||||| |||||||    
T  12118416 tttaccatcacgtgcctgtgttcctccttataccatcacaactgccattgatctagagaag 12118356  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 37166992 - 37167052
Alignment:
Q  5 tttaccatcaggtgcctgtgttactccttacaccttcacaactgccattgatccagagaag 65  Q
    |||||||||| ||||||||||| ||||||| ||| |||||||||||||||||| |||||||    
T  37166992 tttaccatcacgtgcctgtgttcctccttataccatcacaactgccattgatctagagaag 37167052  T

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