View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18192_high_6 (Length: 367)
Name: NF18192_high_6
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 23007609 - 23007245
Alignment:
| Q |
1 |
tcgactctgaagagaagatggtagaatgttcagttttaggtgaacattttttcaaacggacaagtataacaaaatttacttgtcttgtttgaatcttgat |
100 |
Q |
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| T |
23007609 |
tcgactctgaagagaagatggtagaatgttcagttttaggtgaacattttttcaaacggacaagtataacaaaatttacttgtcttgtttgaatcttgat |
23007510 |
T |
|
| Q |
101 |
gctggttctgagtcttctaatgtctctccttgcaccgttgtgctagcttgagttttatgtcgggataaacttataagatcaatgagaaagacatgttaaa |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23007509 |
gctggttctgagtcttctgatgtctctccttgcaccgttgtgctagcttgagttttatgtcgggataaacttataagatcaatgagaaagacatgttaaa |
23007410 |
T |
|
| Q |
201 |
caatgagatatatgattaagagggagttaagatacagtactcttatatatgtaacctactggaagatcagtatctagacattcaacacaaacctagtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23007409 |
caatgagatatatgattaagagggagttaagatacaatactcttatatatgtcacctactggaagatcagtatctagacattcaacacaaacctagtgaa |
23007310 |
T |
|
| Q |
301 |
gtccagagtgca---nnnnnnnnnggataattgtgtaaactaaatttagtccaagtcaccctttg |
362 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23007309 |
gtccagagtgcattttttttttttggataattgtgtaaactaaatttagtccaagtcaccctttg |
23007245 |
T |
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