View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18192_high_7 (Length: 347)
Name: NF18192_high_7
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 37 - 333
Target Start/End: Complemental strand, 3981215 - 3980914
Alignment:
| Q |
37 |
agatgatgcacaattttctgacatgcttcccaagtaacaattttcttcttatttgaacattatgtgatcgtcaaaattgaaaacgttta-----cgttta |
131 |
Q |
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| T |
3981215 |
agatgatgcacaattttctgacatgcttcccaagtaacaattttcttcttatttgaacattatgtgatcgtcaaaattgaaaacgtttagtttacgttta |
3981116 |
T |
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| Q |
132 |
atttaatcagagacttttatattgttttggttttgatatataatggaaatacggaatgatacctactactatccctattattcatatataaaattttgat |
231 |
Q |
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| T |
3981115 |
atttaatcagagacttttatattattttggttttgatatataatggaaatacggaatgatacctactactatccctattattcatatataaaattttgat |
3981016 |
T |
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| Q |
232 |
ataaatgatgttcagacgataaagaaaaagacatcgacaaggcaaaacttcaatattaatattatgcaaatgttgaaagataattgtcgtatataaatta |
331 |
Q |
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| T |
3981015 |
ataaatgatgttcagacgataaagaaaaagacatcgacaaggcaaaacttcaatattaatattatgcaaatgttgaaagataattgtcgtatataaatta |
3980916 |
T |
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| Q |
332 |
tg |
333 |
Q |
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|| |
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| T |
3980915 |
tg |
3980914 |
T |
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