View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18192_low_12 (Length: 332)
Name: NF18192_low_12
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 4496156 - 4495856
Alignment:
| Q |
11 |
cagagaataagactcagttacacagtcgaatgtgaaacttagacaaacaaaaataatgatggctgcataatgctacaatatatataagtgatctatattt |
110 |
Q |
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| T |
4496156 |
cagagaataagactcagttacacagtcgaatgtgaaacttagacaaacaaaaataatgatggctgcataatgctacaatatatataagtgatctatattt |
4496057 |
T |
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| Q |
111 |
atgcaaaattctaaataggctcttgagtgnnnnnnnnnnnnnnnnnnatttgacaaaaaacttttgagtgttattacttgtttattaagtactgttagtt |
210 |
Q |
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| T |
4496056 |
atgaaaaatactaaataggctcttgagtgtttttttttttttttt--atttgacaaaaaacttttgagtgttattacttgtttattaagtactgttagtt |
4495959 |
T |
|
| Q |
211 |
tatataaaccaccgtaaggatgaagcattttcnnnnnnngataaacgaagagtatgaacttgcattaaagtggtagttagacatctcaattaggtgccct |
310 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4495958 |
tatataaaccactgtaaggatgaagcattttctttttttgataaacgaagagtatgaacttgcattaaagtggtagttagacatctcaattaggtgtcct |
4495859 |
T |
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| Q |
311 |
cgt |
313 |
Q |
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||| |
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| T |
4495858 |
cgt |
4495856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 4331840 - 4331908
Alignment:
| Q |
11 |
cagagaataagactcagttacacagtcgaatgtgaaacttagacaaacaaaaataatgatggctgcata |
79 |
Q |
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|||||||||||| ||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||| |
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| T |
4331840 |
cagagaataagattcagttacacagttgaatgagaaacttttacaaacaaaaataatgatggttgcata |
4331908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 22976261 - 22976305
Alignment:
| Q |
251 |
ataaacgaagagtatgaacttgcattaaagtggtagttagacatc |
295 |
Q |
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| T |
22976261 |
ataaaccaagagtatgaacttgcatccaagtggtagttagacatc |
22976305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 32705900 - 32705937
Alignment:
| Q |
258 |
aagagtatgaacttgcattaaagtggtagttagacatc |
295 |
Q |
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| T |
32705900 |
aagagtatggacttgcatcaaagtggtagttagacatc |
32705937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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