View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18192_low_15 (Length: 301)
Name: NF18192_low_15
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 15302235 - 15301964
Alignment:
| Q |
14 |
acctgtgtcaatgaaaaattgccgaaaactcttgatgcttaatcttcagaacaactctttttcaggacctataccaaattggattggaaagggtgtgaaa |
113 |
Q |
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| T |
15302235 |
acctgtgtcaatgaaaaattgccgaaaactcttgatgcttaatcttcagaacaactctttttcaggacctataccaaattggattggaaagggtgtgaaa |
15302136 |
T |
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| Q |
114 |
gttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctttttgttttagatctctcaaataatagattaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15302135 |
gttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctttttgttttagatctctcaaataatagattaa |
15302036 |
T |
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| Q |
214 |
ccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgttacgcaggatgaatttg |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15302035 |
ccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgttacgcaggatgaatttg |
15301964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 15482604 - 15482333
Alignment:
| Q |
14 |
acctgtgtcaatgaaaaattgccgaaaactcttgatgcttaatcttcagaacaactctttttcaggacctataccaaattggattggaaagggtgtgaaa |
113 |
Q |
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| T |
15482604 |
acctgtgtcaatgaaaaattgccgaaaactcttgatgcttaatcttcagaacaactctttttcaggacctataccaaattggattggaaagggtgtgaaa |
15482505 |
T |
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| Q |
114 |
gttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctttttgttttagatctctcaaataatagattaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15482504 |
gttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctttttgttttagatctctcaaataatagattaa |
15482405 |
T |
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| Q |
214 |
ccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgttacgcaggatgaatttg |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15482404 |
ccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgttacgcaggatgaatttg |
15482333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 84 - 271
Target Start/End: Complemental strand, 15445912 - 15445725
Alignment:
| Q |
84 |
ataccaaattggattggaaagggtgtgaaagttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctcttt |
183 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| | |
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| T |
15445912 |
ataccaaattggattggaaaggatatgaaagttcttcaattgagatcaaatgaatttagtggtgacattcctttacaaatatgtcaactatcctctctct |
15445813 |
T |
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| Q |
184 |
ttgttttagatctctcaaataatagattaaccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgttac |
271 |
Q |
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| T |
15445812 |
ttgttttggatctctcaaataatagattaactggaaaaatacctcagtgcctaccaaatatcacctccatgactttcaataatgttac |
15445725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 269
Target Start/End: Complemental strand, 15283673 - 15283477
Alignment:
| Q |
73 |
tttcaggacctataccaaattggattggaaagggtgtgaaagttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaact |
172 |
Q |
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|||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15283673 |
tttcaggaaatataccaaattggattggaaaggatatgaaagttcttcaattgagagtaaatgaatttagtggtgatattcctttacaaatatgccaact |
15283574 |
T |
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| Q |
173 |
atcctctctttttgttttagatctctcaaataatagattaaccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgtt |
269 |
Q |
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||||||||| ||| |||| ||||||||| ||||||||||||| ||||| ||||||| ||| ||| | |||||| |||||||||||||| |||||| |
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| T |
15283573 |
atcctctctatttcttttggatctctcatataatagattaacaggaacaatacctcgctgtctaccaagtatcacctccatgattttcaaaaatgtt |
15283477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 269
Target Start/End: Complemental strand, 15464042 - 15463846
Alignment:
| Q |
73 |
tttcaggacctataccaaattggattggaaagggtgtgaaagttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaact |
172 |
Q |
| |
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|||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
15464042 |
tttcaggaaatataccaaattggattggaaaggatatgaaagttcttcaattgagagtaaatgaatttagtggtgatattcctttacaaatatgccaact |
15463943 |
T |
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| Q |
173 |
atcctctctttttgttttagatctctcaaataatagattaaccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgtt |
269 |
Q |
| |
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||||||||| ||| |||| ||||||||| ||||||||||||| ||||| ||||||| ||| ||| | |||||| |||||||||||||| |||||| |
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| T |
15463942 |
atcctctctatttcttttggatctctcatataatagattaacaggaacaatacctcgctgtctaccaagtatcacctccatgattttcaaaaatgtt |
15463846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 83 - 284
Target Start/End: Complemental strand, 15313031 - 15312830
Alignment:
| Q |
83 |
tataccaaattggattggaaagggtgtgaaagttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctt |
182 |
Q |
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||||||||||||||||||| | | | || |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15313031 |
tataccaaattggattggacaagatatggaagttcttcaattgagatcaaatgaatttagtggtgatattccttcacaaatatgccaactatcctctctc |
15312932 |
T |
|
| Q |
183 |
tttgttttagatctctcaaataatagattaaccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgttacgcaggatgaat |
282 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||| | |||||||| || || |||||||| ||||||| ||| ||| ||||||| || |||||| |
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| T |
15312931 |
tttgttttggatctctcaaataatagattaactggagcaatacctcagtgcctatcaaatatcacttccatgacttttaatgatgttacacaaaatgaat |
15312832 |
T |
|
| Q |
283 |
tt |
284 |
Q |
| |
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|| |
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|
| T |
15312831 |
tt |
15312830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 83 - 284
Target Start/End: Complemental strand, 15493400 - 15493199
Alignment:
| Q |
83 |
tataccaaattggattggaaagggtgtgaaagttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctctt |
182 |
Q |
| |
|
||||||||||||||||||| | | | || |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
15493400 |
tataccaaattggattggacaagatatggaagttcttcaattgagatcaaatgaatttagtggtgatattccttcacaaatatgccaactatcctctctc |
15493301 |
T |
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| Q |
183 |
tttgttttagatctctcaaataatagattaaccggaacgatacctcattgtatacataatatcacatccatgattttcaataatgttacgcaggatgaat |
282 |
Q |
| |
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|||||||| ||||||||||||||||||||||| ||| | |||||||| || || |||||||| ||||||| ||| ||| ||||||| || |||||| |
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| T |
15493300 |
tttgttttggatctctcaaataatagattaactggagcaatacctcagtgcctatcaaatatcacttccatgacttttaatgatgttacacaaaatgaat |
15493201 |
T |
|
| Q |
283 |
tt |
284 |
Q |
| |
|
|| |
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|
| T |
15493200 |
tt |
15493199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 226
Target Start/End: Complemental strand, 18051656 - 18051514
Alignment:
| Q |
84 |
ataccaaattggattggaaagggtgtgaaagttcttcaattgagttcaaatgaatttagtggtgatattcctttacaaatatgccaactatcctctcttt |
183 |
Q |
| |
|
|||||||||||||||||| | | ||||||| ||| ||||| |||||||||||| |||||| ||||||| |||||||||||||||| || ||||| |
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| T |
18051656 |
ataccaaattggattggacatgacgtgaaagctctcaggttgagatcaaatgaatttcgtggtgttattcctctacaaatatgccaactttcttctctca |
18051557 |
T |
|
| Q |
184 |
ttgttttagatctctcaaataatagattaaccggaacgatacc |
226 |
Q |
| |
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| ||||| ||||| | ||||||| |||| | ||||| ||||| |
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|
| T |
18051556 |
tagttttggatcttgcgaataataaattatcaggaacaatacc |
18051514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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