View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18192_low_17 (Length: 264)
Name: NF18192_low_17
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 42356971 - 42356735
Alignment:
| Q |
18 |
agtgttccggccggtaactcggccagtggggagctactatctgttggacctagtaatgacaaaccgaaatccgaaactcttgcattgtgttcttcatcaa |
117 |
Q |
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| T |
42356971 |
agtgttccggccggtaactcggccagtggggagctactatctgttggacctagtaatgacaaaccgaaatccgaaactcttgcattgtgttcttcatcaa |
42356872 |
T |
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| Q |
118 |
tgagtatgtttgaagatttgatgtctctatgaatcaccggtgggcacgcatagccgtggagatattcaattcctcgagctgcttggaccgcaattgttac |
217 |
Q |
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| T |
42356871 |
tgagtatgtttgaagatttgatgtctctatgaatcaccggtgggcacgcatagccgtggagatattcaattcctcgagctgcttggaccgcaattgttac |
42356772 |
T |
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| Q |
218 |
ccttctgatccaatccaattgctctttcaaccctttg |
254 |
Q |
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| T |
42356771 |
ccttctgatccaatccaattgctctttcaactctttg |
42356735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 25372621 - 25372829
Alignment:
| Q |
21 |
gttccggccggtaactcggccagtggggagctactatctgttggacctagtaatgacaaaccgaaatccgaaactcttgcattgtgttcttcatcaatga |
120 |
Q |
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| T |
25372621 |
gttccggctggtagctcggcgagcggagaactactatcaacaggacctaacaatgataaaccaaaatcagctactcttgcattgtgttcttcatcaatga |
25372720 |
T |
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| Q |
121 |
gtatgtttgaagatttgatgtctctatgaatcaccggtgggcacgcatagccgtggagatattcaattcctcgagctgcttggaccgcaattgttaccct |
220 |
Q |
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| T |
25372721 |
gtatgtttgaggatttaatatctctatgaatcaccggtggacaagcgtagccgtgtaaatattcgattccacgagccgcttgaactgctattgttaccct |
25372820 |
T |
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| Q |
221 |
tctgatcca |
229 |
Q |
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| T |
25372821 |
tcttatcca |
25372829 |
T |
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