View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18192_low_18 (Length: 258)
Name: NF18192_low_18
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 243
Target Start/End: Complemental strand, 2552680 - 2552448
Alignment:
| Q |
11 |
atgaaacattaaaagctcatttccatcaacaaggcaacgtggatgattcttaatttgtagcttgttggcattaatcttcaccatttctctatactcttca |
110 |
Q |
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| T |
2552680 |
atgaaacattaaaagctcatttccatcaacaaggcaacgtgcatgattcttaatttgtagcttgttggcattaatcttcaccatttctctatactcttca |
2552581 |
T |
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| Q |
111 |
aagcattgaaatgtttttggcatgttgtggacttttaagatacaatcaatctgccacaattcagaactaataaagcttgttccactttcacatattgttt |
210 |
Q |
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| T |
2552580 |
aagcattgaaatgtttttggcatgttgtggacttttaagatacaatcaatctgccacaattcagaactaataaagcttgttccactttcacatattgttt |
2552481 |
T |
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| Q |
211 |
ccacaatcttcctagatgaagtttcttcaagtt |
243 |
Q |
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| T |
2552480 |
ccacaatcttcctagatgaagtttcttcaagtt |
2552448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 2565147 - 2564922
Alignment:
| Q |
15 |
aacattaaaagctcatttccatcaacaaggcaacgtggatgattcttaatttgtagcttgttggcattaatcttcaccatttctctatactcttcaaagc |
114 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| || || |||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
2565147 |
aacattaaaagctcatttccatctgcaaggcaacgtggatgatt---aacatgcagcttgttggcattaatctttacaatttctctatactcttcaaagc |
2565051 |
T |
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| Q |
115 |
attgaaatgtttttggcatgttgtggacttttaagatacaatcaatctgccacaattcagaactaataaagcttgttccactttcacatattgtttccac |
214 |
Q |
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|| || |||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||| || |||||||| || |||||||| || | || |
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| T |
2565050 |
atgcaagtgtttttggcatgttgtggacttttagtatacaatcaatctgcctcaattctgaactaaccaaatttgttccatttccacatattattcctac |
2564951 |
T |
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| Q |
215 |
aatcttcctagatgaagtttcttcaagtt |
243 |
Q |
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| T |
2564950 |
aatctgtcgagatgaatcttcttcaagtt |
2564922 |
T |
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