View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18192_low_2 (Length: 1120)

Name: NF18192_low_2
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18192_low_2
NF18192_low_2
[»] chr5 (11 HSPs)
chr5 (141-720)||(41703717-41704314)
chr5 (748-1016)||(41703458-41703722)
chr5 (512-967)||(41467192-41467644)
chr5 (20-101)||(41704313-41704394)
chr5 (715-802)||(41506883-41506970)
chr5 (748-810)||(41513161-41513223)
chr5 (701-787)||(41497620-41497706)
chr5 (748-810)||(41522096-41522158)
chr5 (852-965)||(41513268-41513381)
chr5 (701-775)||(33077964-33078038)
chr5 (894-967)||(33078159-33078232)
[»] chr3 (1 HSPs)
chr3 (512-652)||(36467105-36467243)
[»] chr6 (1 HSPs)
chr6 (332-380)||(33826623-33826671)
[»] chr8 (1 HSPs)
chr8 (332-375)||(10908947-10908990)


Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 141 - 720
Target Start/End: Complemental strand, 41704314 - 41703717
Alignment:
Q  141 ctagtatctttctgcatcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttg 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704314 ctagtatctttctgcatcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttg 41704215  T
Q  241 gatgtgtaagatttaattttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaaccaattagtaactactt 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | ||    
T  41704214 gatgtgtaagatttaattttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaactaa-tagtaaccaatt 41704116  T
Q  341 -ttaacaaactctaacaatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacatt 439  Q
      |||| |  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704115 agtaactacttttaacaatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacatt 41704016  T
Q  440 acaagaggtggtgtcttcggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgtta---------------------tgtattatagtt 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     ||||||||| ||    
T  41704015 acaagaggtggtgtcttcggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgttatgtattatacaagctaacatctgtattatactt 41703916  T
Q  519 tcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctaccttgg-- 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||       ||||||||      
T  41703915 tcaaaactaagaactaacatgagttaattgttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttata-------taccttggat 41703823  T
Q  617 --ataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcatcga 714  Q
      |||||||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  41703822 atataatagttcaataatcctgcactgtctgcctacatgtttttcttttttgcaccagaccatattgtaagattatggagaaaaggcaatgaaccatcga 41703723  T

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Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 748 - 1016
Target Start/End: Complemental strand, 41703722 - 41703458
Alignment:
Q  748 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga 847  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703722 aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga 41703623  T
Q  848 acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca 947  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703622 acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca 41703523  T
Q  948 gctggtccaaaaagagatatatatgttaatatttgccaaacatgataatactcaaacaaaaacttcaaa 1016  Q
    |||||||||| |||||    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41703522 gctggtccaacaagag----atatgtttatatttgccaaacatgataatactcaaacaaaaacttcaaa 41703458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 512 - 967
Target Start/End: Original strand, 41467192 - 41467644
Alignment:
Q  512 tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctac 611  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| | || |||    
T  41467192 tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttatagcctatttac 41467291  T
Q  612 cttggataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcat 711  Q
    ||| |||||||||||   ||||||||||||||| |||||||              || |||||| ||| |||||||||| ||||       ||||| |||    
T  41467292 cttagataatagttc---aatcctgcactgtctacctacatctttttcttttttgcatcagaccttattgtaagattatcgaga------catgaaccat 41467382  T
Q  712 cgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccag 811  Q
    || | ||||||||||| |||||||||| |  |||| |||||||||||||||||||  |||||||||||||| |||||||||||| |||||| |||| |||    
T  41467383 cggaggaagtagaagtcgaggtttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcag 41467482  T
Q  812 tgccactgatgaacatgg---------atttgcggtgattccagaacatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtca 902  Q
     ||| ||||||||| |||          ||  | ||||||||| |||  |||||||||||||||| ||||  ||  |||||||||||||| ||   ||||    
T  41467483 ggcccctgatgaacttggctcttcaatcttcacagtgattccaaaactagctttcttttcatgtattccttgaggcatagattgatcatcatc---gtca 41467579  T
Q  903 tggtttatgatctcaatctcattttccagtttcagacttccaccagctggtccaaaaagagatat 967  Q
     |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  41467580 aggtttatgatctcaatctcattttccagtttcactcttccaccggctggtccaaaaagagatat 41467644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 41704394 - 41704313
Alignment:
Q  20 gtggtttcattgatggtgttcatcaatgaaagatagaacaatggatagtgttgtcactggtcaaagggaccgtaaggccgct 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704394 gtggtttcattgatggtgttcatcaatgaaagatagaacaatggatagtgttgtcactggtcaaagggaccgtaaggccgct 41704313  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 715 - 802
Target Start/End: Original strand, 41506883 - 41506970
Alignment:
Q  715 aagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 802  Q
    |||||| ||||||||||||||||| |  |||| |||||||||||||||||||  ||||||||||||| ||||| ||| ||| ||||||    
T  41506883 aagaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg 41506970  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 748 - 810
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
Q  748 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 810  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||    
T  41513161 aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41513223  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 701 - 787
Target Start/End: Original strand, 41497620 - 41497706
Alignment:
Q  701 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaa 787  Q
    ||||||||||||  | |||| ||||||||||||||||| |  |||| |||||||||||||||||||| ||| ||| ||||| |||||    
T  41497620 caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgactgtgttaaccgcatttgcaaa 41497706  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 748 - 810
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
Q  748 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 810  Q
    |||||||||||||||| |   ||||||||||||||| ||||||||||| ||||||||||||||    
T  41522096 aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41522158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 852 - 965
Target Start/End: Original strand, 41513268 - 41513381
Alignment:
Q  852 gctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctg 951  Q
    |||||||||||||||||||||| ||| |||||   | ||||||||| |||| ||| ||||| |||||| |  || ||||||||||  ||||||| |||||    
T  41513268 gctttcttttcatgtactcctcgagacatagacccaacatcgtcgtcgtcaaggtatatgacctcaatattcttatccagtttcactcttccactagctg 41513367  T
Q  952 gtccaaaaagagat 965  Q
     | |||||||||||    
T  41513368 atacaaaaagagat 41513381  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 701 - 775
Target Start/End: Original strand, 33077964 - 33078038
Alignment:
Q  701 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaac 775  Q
    |||| |||||||| | || ||||||||||||||||||| |  | || ||||| |||||||||||||| |||||||    
T  33077964 caataaatcatcggaggacgtagaagtggaggtttcactgtcggtgaaagaatattttcttttgactgtgtcaac 33078038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 967
Target Start/End: Original strand, 33078159 - 33078232
Alignment:
Q  894 tcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctggtccaaaaagagatat 967  Q
    ||||||||| ||||||||| ||| || || |||| || |||||  ||||||||| ||||| |||||||||||||    
T  33078159 tcgttgtcaaggtttatgacctccatatcctttttcaatttcaatcttccaccaactggtacaaaaagagatat 33078232  T

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Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 512 - 652
Target Start/End: Original strand, 36467105 - 36467243
Alignment:
Q  512 tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttatagtccatcta 610  Q
    |||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||| |||| ||    
T  36467105 tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccattta 36467204  T
Q  611 ccttggataatagttcaataatcctgcactgtctgcctacat 652  Q
    |||| |||| ||||||   |||||||||||| ||||||||||    
T  36467205 ccttagatattagttc---aatcctgcactgcctgcctacat 36467243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 33826671 - 33826623
Alignment:
Q  332 taactacttttaacaaactctaacaatatctaatgattctctaattata 380  Q
    ||||||||||||||||||||||||||||||||   |||| |||||||||    
T  33826671 taactacttttaacaaactctaacaatatctatcaattcactaattata 33826623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 10908990 - 10908947
Alignment:
Q  332 taactacttttaacaaactctaacaatatctaatgattctctaa 375  Q
    ||||||| |||||||||||||||||||||||||| | |||||||    
T  10908990 taactacatttaacaaactctaacaatatctaataaatctctaa 10908947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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