View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18192_low_3 (Length: 517)
Name: NF18192_low_3
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 15 - 490
Target Start/End: Original strand, 37595990 - 37596465
Alignment:
| Q |
15 |
aggagactcaacaagtttggagtatttggaaaaattgatgagccttgtatcatcaagaaaaacactcttttcaatcctcttaggtacaacaacagaatga |
114 |
Q |
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| T |
37595990 |
aggagactcaacaagtttggagtatttggaaaaattgatgagccttgtatcatcaagaaaaacactcttttcaatcctcttaggtacaacaacagaatga |
37596089 |
T |
|
| Q |
115 |
ttagaatcacgtatactcatacacactgctgttgatgattgagagtggcacatgaaacctcttatcattttcttgttacttgttttcaaactcatcatag |
214 |
Q |
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| T |
37596090 |
ttagaatcacgtatactcatacacactgctgttgatgattgagagtggcacatgaaacctcttatcattttcttgttacttgttttcaaactcatcatag |
37596189 |
T |
|
| Q |
215 |
tttactaattcacaaatgaatattttctaaggggaaaagtgtcaaatggtgaataaaaagtgcaaagaacaaaaaagggttattgtgagagaatgagaga |
314 |
Q |
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| T |
37596190 |
tttactaattcacaaatgaatattttctaaggggaaaagtgtcaaatggtgaataaaaagtgcaaagaacaaaaaagggttattgtgagagaatgagaga |
37596289 |
T |
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| Q |
315 |
aagtgacaatatagaagagaagagatcaatgctgaaatttgctaacaatagggtactgaattttgtaaaaatgcttttgtcattttgtctattattattg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37596290 |
aagtgacaatatagaagagaagagatcaatgctgaaatttgctaacaatagggtactgaattttgtaaaaatgcttttgtcattttgtctattattattg |
37596389 |
T |
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| Q |
415 |
atgcatatactgtgaagtaaaagtgtcaaaaatcttgtccttttcagtggtaaatgctttgaaattgacctatgct |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37596390 |
atgcatatactgtgaagtaaaagtgtcaaaaatcttgtccttttcagtggtaaatgctttgaaattgacctatgct |
37596465 |
T |
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