View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18192_low_4 (Length: 514)
Name: NF18192_low_4
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 4 - 483
Target Start/End: Complemental strand, 8004461 - 8003982
Alignment:
| Q |
4 |
ttcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatga |
103 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8004461 |
ttcatcccggtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatga |
8004362 |
T |
|
| Q |
104 |
tgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttccgaatcaagatatgc |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8004361 |
tgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttctgaatcaagatatgc |
8004262 |
T |
|
| Q |
204 |
acttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaactataaatgctatttagtttaaaatgaataga |
303 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8004261 |
acttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaactataaatactatttagtttaaaatgaataga |
8004162 |
T |
|
| Q |
304 |
tgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaatggatcgtga |
403 |
Q |
| |
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||||||||| || |||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
8004161 |
tgtctaaagcaggaaaaacaaacacgcaacaaagctgagtgatatagttccaaaagtcttgccacaacatcatcacaaatagaacagtaatgaatcgtga |
8004062 |
T |
|
| Q |
404 |
attcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagtttc |
483 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8004061 |
attcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttc |
8003982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 4 - 482
Target Start/End: Original strand, 7900644 - 7901123
Alignment:
| Q |
4 |
ttcatcccagtaagcaatgattgtggacagtttgcagtacaattaa-ttgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatg |
102 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
7900644 |
ttcatcccagtaagcagtgattgtggacagtttgcagtaaaattaaattgaaggttgaccctcaagaacgataactttgtcagcaagataatttgccatg |
7900743 |
T |
|
| Q |
103 |
atgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttccgaatcaagatatg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||| |
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| T |
7900744 |
atgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcaactacaatacgctgttcggaatcaagatatg |
7900843 |
T |
|
| Q |
203 |
cacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaactataaatgctatttagtttaaaatgaatag |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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|
| T |
7900844 |
cacttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattaaaaaactataaatactatttagtttaaaatgaatag |
7900943 |
T |
|
| Q |
303 |
atgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaatggatcgtg |
402 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7900944 |
atgtctaaagtagcaaaatcaaacacacaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaatagaacagtaatgaatcgtg |
7901043 |
T |
|
| Q |
403 |
aattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| ||||||| |
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|
| T |
7901044 |
aattcaattaatattttgtttgaagtaaaatgtatacattaaagagatataaatagatcaatcacaacaaatccaagttt |
7901123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 270
Target Start/End: Complemental strand, 51518781 - 51518515
Alignment:
| Q |
4 |
ttcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatga |
103 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
51518781 |
ttcatcccggtcagcaatgattgtggacaatttgcagtacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatga |
51518682 |
T |
|
| Q |
104 |
tgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttccgaatcaagatatgc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51518681 |
tgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttgatgacttttgcagcaacaatacgctgttcggaatcaagatatgc |
51518582 |
T |
|
| Q |
204 |
acttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaa |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
51518581 |
acttggctcatctatcagatagatgtctgcaggctgttgttgtaggacaatagcaactgattagaaa |
51518515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 402 - 483
Target Start/End: Original strand, 7904498 - 7904579
Alignment:
| Q |
402 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagtttc |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
7904498 |
gaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacagacatagatcaatcacaacaaattcaagtttc |
7904579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 402 - 482
Target Start/End: Original strand, 7902873 - 7902954
Alignment:
| Q |
402 |
gaattcaattaatattttgtttgaagtaaaatgta-tacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
482 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||||||| ||||||| |
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|
| T |
7902873 |
gaattcaattaatattttgtttgaagtaaaatgtattacattaaagagatataaatagatcaatcacaacaaatccaagttt |
7902954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 383 - 483
Target Start/End: Complemental strand, 51518446 - 51518346
Alignment:
| Q |
383 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtatacattaaagagacaaacatagatcaatcacaacaaattcaagttt |
482 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| || ||| | | ||| | |||||||||||||| ||||||| |
|
|
| T |
51518446 |
tagaacagtaatggaatgtgaattcaattaatattttgtttgaaataaaatgtatacatttaacagatagaaatataacaatcacaacaaatccaagttt |
51518347 |
T |
|
| Q |
483 |
c |
483 |
Q |
| |
|
| |
|
|
| T |
51518346 |
c |
51518346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 386
Target Start/End: Original strand, 1300391 - 1300778
Alignment:
| Q |
4 |
ttcatcccagtaagcaatgattgtggacagtttgcagtacaattaattgaaggttgaccctcataaacgataactttgtcagcaagataagttgccatga |
103 |
Q |
| |
|
||||||||||| |||| |||||||||| | ||||||||||| | |||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
1300391 |
ttcatcccagtcagcagtgattgtggagaatttgcagtacagtcaattgaaggttgaccctcataaacaataactctgtcagcaagataagttgccatga |
1300490 |
T |
|
| Q |
104 |
tgaaatcatgctcaacgataaaggctgttttctttgcatgaagaataaacctcttaatgacttttgcagcaacaatacgctgttccgaatcaagatatgc |
203 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
1300491 |
tgaaatcatgctcaaccacaaaggctgttttctttgcatgaagaataaacctcttgataacttttgcagcaataatacgctgttcggaatcaagatatgc |
1300590 |
T |
|
| Q |
204 |
acttggctcatctatcagatagatgtctgcaggctgttgttgtagaacaatagcaactgattagaaaactataaatgctatttagtttaaaatgaatag- |
302 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||| || ||||||| ||||||||||||| ||||| |||||| |||| |||| ||||| |
|
|
| T |
1300591 |
acttggctcatctatcagataaatgtctgcaggctgttgtggtaggacgatagcaattgattagaaaactgtaaatactatttcgtttgaaataaatagg |
1300690 |
T |
|
| Q |
303 |
-----atgtctaaagtagcaaaatcaaacacgcaacaaagctgagtgatatagttctaaaaatcttgctacaacatcatcacaaataga |
386 |
Q |
| |
|
| ||| ||||||||||| |||| || ||||||||| || |||||||||||||||||||||| | || ||| |||||||||| |
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|
| T |
1300691 |
agtgcacatctcaagtagcaaaa-caaagacacaacaaagccaagagatatagttctaaaaatcttgccatgacgtcagcacaaataga |
1300778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 1300798 - 1300855
Alignment:
| Q |
383 |
tagaacagtaatggatcgtgaattcaattaatattttgtttgaagtaaaatgtataca |
440 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1300798 |
tagaaccgtaatggatcaggaattcaattaatatttattttgaaataaaatgtataca |
1300855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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