View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18192_low_6 (Length: 468)

Name: NF18192_low_6
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18192_low_6
NF18192_low_6
[»] chr2 (15 HSPs)
chr2 (40-364)||(28215611-28215935)
chr2 (137-361)||(32565382-32565609)
chr2 (137-361)||(32806567-32806794)
chr2 (137-361)||(32815004-32815231)
chr2 (137-361)||(32309226-32309453)
chr2 (198-364)||(28220447-28220610)
chr2 (137-334)||(32799640-32799840)
chr2 (87-219)||(28220224-28220356)
chr2 (40-123)||(32309084-32309167)
chr2 (40-123)||(32565668-32565751)
chr2 (40-123)||(32799899-32799982)
chr2 (40-123)||(32806853-32806936)
chr2 (40-123)||(32815290-32815373)
chr2 (320-361)||(32305344-32305385)
chr2 (40-68)||(28216011-28216039)
[»] chr6 (2 HSPs)
chr6 (122-358)||(301362-301596)
chr6 (40-123)||(301238-301321)


Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 40 - 364
Target Start/End: Complemental strand, 28215935 - 28215611
Alignment:
Q  40 agaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaacaacttcatttaattt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215935 agaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaacaacttcatttaattt 28215836  T
Q  140 ctatcatacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataatttctat 239  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215835 ctatcatacttcttttcgttcagtgaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataatttctat 28215736  T
Q  240 aaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtctcttct 339  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215735 aaggattcttgccctgaagctgagaatattgttcgttccgctgttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtctcttct 28215636  T
Q  340 ttcatgattgcttcatccaggttcc 364  Q
    |||||||||||||||||||||||||    
T  28215635 ttcatgattgcttcatccaggttcc 28215611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 137 - 361
Target Start/End: Complemental strand, 32565609 - 32565382
Alignment:
Q  137 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 233  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32565609 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32565510  T
Q  234 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 333  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32565509 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32565410  T
Q  334 tcttctttcatgattgcttcatccaggt 361  Q
    ||||||||||||||||||||||||||||    
T  32565409 tcttctttcatgattgcttcatccaggt 32565382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 137 - 361
Target Start/End: Complemental strand, 32806794 - 32806567
Alignment:
Q  137 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 233  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32806794 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32806695  T
Q  234 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 333  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32806694 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32806595  T
Q  334 tcttctttcatgattgcttcatccaggt 361  Q
    ||||||||||||||||||||||||||||    
T  32806594 tcttctttcatgattgcttcatccaggt 32806567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 137 - 361
Target Start/End: Complemental strand, 32815231 - 32815004
Alignment:
Q  137 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 233  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32815231 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32815132  T
Q  234 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 333  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32815131 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32815032  T
Q  334 tcttctttcatgattgcttcatccaggt 361  Q
    | ||||||||||||||||||||||||||    
T  32815031 ttttctttcatgattgcttcatccaggt 32815004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 137 - 361
Target Start/End: Original strand, 32309226 - 32309453
Alignment:
Q  137 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 233  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32309226 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32309325  T
Q  234 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 333  Q
    ||||||| ||||||||||||| |||||||  ||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32309326 ttctatagggattcttgccctcaagctgaagataatgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32309425  T
Q  334 tcttctttcatgattgcttcatccaggt 361  Q
    | ||||||||||||||||||||||||||    
T  32309426 ttttctttcatgattgcttcatccaggt 32309453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 198 - 364
Target Start/End: Original strand, 28220447 - 28220610
Alignment:
Q  198 gaaagtatcagagatggttccaatcttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttact 297  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  28220447 gaaagaatcagagatggttccaatcttcaatataatttctataaggtttcttgccctcaagctgagaatattgttcgttccgctgttaccgatatttact 28220546  T
Q  298 ctgatcatagagaccttgcaccttctcttcttcgtctcttctttcatgattgcttcatccaggttcc 364  Q
     | |||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  28220547 ttaatcatagagacc-tgcaccttctcttcttcgtctct--tttcatgattgcttcatccaggttcc 28220610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 137 - 334
Target Start/End: Complemental strand, 32799840 - 32799640
Alignment:
Q  137 tttctatcatacttcttttcgttcagtcaagttagctgg---tatttttccgtttgatttcagtgaaagtatcagagatggttccaatcttcgatataat 233  Q
    ||||| |||||||||||||||||||||||  ||||| |    || |||||| |||||||||| | |||| |||||||||||||||||||||| |||||||    
T  32799840 tttctctcatacttcttttcgttcagtcattttagcagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaatcttcaatataat 32799741  T
Q  234 ttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcaccttctcttcttcgtc 333  Q
    ||||||| ||||||||||||| |||||||  |||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  32799740 ttctatagggattcttgccctcaagctgaagatattgttcgttccgctgttaccgatatctactttgatcatagagaccttgcaccttctcttcttcgtc 32799641  T
Q  334 t 334  Q
    |    
T  32799640 t 32799640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 28220224 - 28220356
Alignment:
Q  87 ttcattgcagtccttcctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgt 186  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28220224 ttcattgcagtcctttctgttcttctctctctcagaacaacttcatttaatttctatcatacttcttttcgttcagtgaagttagctggtatttttccgt 28220323  T
Q  187 ttgatttcagtgaaagtatcagagatggttcca 219  Q
    ||||||||| | |||| ||||||||||||||||    
T  28220324 ttgatttcaatcaaagaatcagagatggttcca 28220356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 32309084 - 32309167
Alignment:
Q  40 agaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 123  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32309084 agaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32309167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 32565751 - 32565668
Alignment:
Q  40 agaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 123  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32565751 agaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32565668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 32799982 - 32799899
Alignment:
Q  40 agaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 123  Q
    ||||||||||||||||||||||||||||| ||||| || ||||||||||||||| | |||||||||||||||||||||||||||    
T  32799982 agaaaatgaggagattcttcatcttcaacccatggttcatagttgcattcattgtattccttcctgttcttctctctctcagaa 32799899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 32806936 - 32806853
Alignment:
Q  40 agaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 123  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | ||||||||||||||| |||||||||||    
T  32806936 agaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttccctctctcagaa 32806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 32815373 - 32815290
Alignment:
Q  40 agaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 123  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||||    
T  32815373 agaaaatgaggagattcttcatcttcaacccatggatcatagttgcattcattgtattccttcctgttcttgtctctctcagaa 32815290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 361
Target Start/End: Original strand, 32305344 - 32305385
Alignment:
Q  320 ttctcttcttcgtctcttctttcatgattgcttcatccaggt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  32305344 ttctcttcttcgtctcttctttcatgattgcttcatccaggt 32305385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 68
Target Start/End: Complemental strand, 28216039 - 28216011
Alignment:
Q  40 agaaaatgaggagattcttcatcttcaac 68  Q
    |||||||||||||||||||||||||||||    
T  28216039 agaaaatgaggagattcttcatcttcaac 28216011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 122 - 358
Target Start/End: Original strand, 301362 - 301596
Alignment:
Q  122 aacaacttcatttaatttctatcatacttcttttcgttcagtcaagttagctggtatttttccgtttgatttcagtgaaagtatcagagatggttccaat 221  Q
    ||||||||||| |  ||||| ||||||  ||||| ||||||||| ||||||   || |||||| |||||||||| | |||| ||||||||||||||||||    
T  301362 aacaacttcatcttctttctctcatac--cttttggttcagtcacgttagccaatacttttccatttgatttcaatcaaagaatcagagatggttccaat 301459  T
Q  222 cttcgatataatttctataaggattcttgccctgaagctgagaatattgttcgttccgcagttaccgatatttactctgatcatagagaccttgcacctt 321  Q
    |||| |||||||||||||| ||||||| ||||| |||||||  ||||||||| |||||| ||||||||||| |||  |||||||||||||||||||||||    
T  301460 cttcaatataatttctatagggattctagccctcaagctgaagatattgttccttccgctgttaccgatatctaccttgatcatagagaccttgcacctt 301559  T
Q  322 ctcttcttcgtctcttctttcatgattgcttcatcca 358  Q
    |||||||||||||||||||||||||||||||||||||    
T  301560 ctcttcttcgtctcttctttcatgattgcttcatcca 301596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 40 - 123
Target Start/End: Original strand, 301238 - 301321
Alignment:
Q  40 agaaaatgaggagattcttcatcttcaacacatggatcttagttgcattcattgcagtccttcctgttcttctctctctcagaa 123  Q
    |||||||||| |||||||||||||||||| ||||| || ||||||||||||||| ||||||||| |||||||||||| ||||||    
T  301238 agaaaatgagaagattcttcatcttcaacccatggttcatagttgcattcattgtagtccttcccgttcttctctctttcagaa 301321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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