View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18192_low_8 (Length: 387)
Name: NF18192_low_8
Description: NF18192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18192_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 47221627 - 47221988
Alignment:
| Q |
18 |
acctcgtctttccccaaacgaggtaaaggcttagactttatcacttgaggtattggaccccatgaagacgaag---aacatgatgacgatgatgatgttt |
114 |
Q |
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| T |
47221627 |
acctcgtctttccccaaacgaggtaaaggcttagactttatcacttgaggtattggaccccatgaagacgaagaagaacatgatgacgatgatgatgttt |
47221726 |
T |
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| Q |
115 |
gaggctttgaaagaggtaaaagataaagtgaatgaagacgacgaaatccaccaagagcaagaacaacagatcgtagttgttgttcaccacagccagtgtt |
214 |
Q |
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| T |
47221727 |
gaggctttgaaagaggtaaaagataaagtgaatgaagacgacgaaatccaccaagagcaagaacaacagatcgtagttgttgttcaccacagccagtgtt |
47221826 |
T |
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| Q |
215 |
agcccactgttttgtacagatcagctcccaaagtctctcatcttgtgctgttttgtgccattgtttgttcacacaactcgacatcgctaaagtccttgcg |
314 |
Q |
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| T |
47221827 |
agcccactgttttgtacagatcagctcccaaagtctctcatcttgtgctgttttgtgccattgtttgttcacacaactcgacatcgctaaagtccttgcg |
47221926 |
T |
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| Q |
315 |
tcaacgtgtttcagaacttcaaacagcatattctcatcaaaactcgctagcccacgattctt |
376 |
Q |
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| T |
47221927 |
tcaacgtgtttcagaacttcaaacaacatattctcatcaaaactcgctagcccgcgattctt |
47221988 |
T |
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