View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18193_low_3 (Length: 277)
Name: NF18193_low_3
Description: NF18193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18193_low_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 32426668 - 32426932
Alignment:
| Q |
16 |
agataaaagacagataaggaaataatttcacattcattaagtccaacaatggcaatgccttgaattcacgcccattcagcattcaatacaaagatatgta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32426668 |
agataaaagacagataaggaaataatttcacattcattaagtccaacaatggcaatgccttgaattcacacccattcagcattcaatacaaagatatgta |
32426767 |
T |
|
| Q |
116 |
acatgatacaaacaaattatcaggttatgaatgaacttgtataccatgaattcacaccaattcaacattcaggatatctagcacaatgcacacaaattct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32426768 |
acatgatacaaacaaattatcaggttatgaatgaacttgtataccatgaattcacaccaattcaacattcaggatatctaacacaatgcacacaaattct |
32426867 |
T |
|
| Q |
216 |
caggttatgaatgaacttgtaaattg---ttcgtgaatcatgattatacatacatatataatttt |
277 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
32426868 |
caggttatgaatgaacttgtaaattgttcttcatgaatcatgattatacatacatatataatttt |
32426932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University