View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18194_high_1 (Length: 490)
Name: NF18194_high_1
Description: NF18194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18194_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Complemental strand, 38261227 - 38260748
Alignment:
| Q |
9 |
catcatcattgacagaagcatttgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatatgaagacgcggcct |
108 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
38261227 |
catcatcattgacataagcatgtgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatctgaagacgcggcct |
38261128 |
T |
|
| Q |
109 |
ctttcgaatcctagaaatgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38261127 |
ctttcgaatcctagaaatgtatctcttttttctgtcttcttcactttcgaacttgcagtgacttgatgaaacatgattagcaaatttttgtgatgtttca |
38261028 |
T |
|
| Q |
209 |
aatattttgttgcattttgaacatgggtatggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttct |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38261027 |
aatattttgttgcattttgaacatgggtatggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttct |
38260928 |
T |
|
| Q |
309 |
ttctcatatcgttcttgttaacatccccaacatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggag |
408 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38260927 |
ttctcatatcgttcttgttaacat-cccaacatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggag |
38260829 |
T |
|
| Q |
409 |
atcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgttgttcttgttgttattgatgatgatgtc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38260828 |
atcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgttattcttgttgttattgatgatgatgtc |
38260748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 472
Target Start/End: Complemental strand, 38244927 - 38244467
Alignment:
| Q |
9 |
catcatcattgacagaagcatttgacttatcaccacaagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatatgaagacgcggcct |
108 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || |
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|
| T |
38244927 |
catcattattgattgaagcatgtgacttatcagcacaagcaacaacaggaacaaaagtagttcttccatcattgagcttttgaatctgaagacgcggtct |
38244828 |
T |
|
| Q |
109 |
ctttcgaatcctagaaatgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttca |
208 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38244827 |
ctttcgaatcctagaattgtatctcttttttctgtcttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttca |
38244728 |
T |
|
| Q |
209 |
aatattttgttgcattttgaacatgggtatggtccatatttcttgtgtggtaggctgtggattcttccatcattaatattttcatttctcttcttcttct |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| ||| | ||||||| ||||||||||| ||||||||||||| |
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|
| T |
38244727 |
aatattttgttgcattgggaacatgggtatggtccatgtttctcgtgtggtaggctgtgaattttaccatcatcgatattttcattgctcttcttcttct |
38244628 |
T |
|
| Q |
309 |
ttctcatatcgttcttgttaacatccccaacatcagcaactgaaatattaattgtttgagaaggcagttcttgtgattgtgatgataagcctacatggag |
408 |
Q |
| |
|
| || |||| |||||||||| ||||| |||||||| ||| | | ||| || ||||||||||||||||||||| ||||||||||||||||||||| || |
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|
| T |
38244627 |
tccttttatcattcttgttaatatccctaacatcagtaacaaataaattgatagtttgagaaggcagttcttgtagttgtgatgataagcctacatgaag |
38244528 |
T |
|
| Q |
409 |
atcaagatgagaagaagcagcaacataagtattcattgtcatcatcatgttgttgttcttgttg |
472 |
Q |
| |
|
||||||||||||||||| || | ||||||||||| |||||||| |||||||||| |||||| |
|
|
| T |
38244527 |
atcaagatgagaagaagtag---tagaagtattcattttcatcatcttgttgttgttgttgttg |
38244467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 45 - 286
Target Start/End: Original strand, 47285499 - 47285737
Alignment:
| Q |
45 |
aagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatatgaagacgcggcctctttcgaatcctagaaatgtatctcttttttctgtc |
144 |
Q |
| |
|
||||||| |||| ||||| ||||||||||||||||| |||||||||||| || ||| || |||||||| |||||||| ||||||||||||||||| || |
|
|
| T |
47285499 |
aagcaatgacagaaacaagagtagttgttccatcatcgagcttttgaatctggagatatggtctctttcggatcctagacatgtatctcttttttctctc |
47285598 |
T |
|
| Q |
145 |
ttcttcactttcgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaatattttgttgcattttgaacatgggtatggtcca |
244 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||| ||| ||||| ||||||||| | | || ||||||||| | |||||| | ||| |||||| |
|
|
| T |
47285599 |
ttcttcactttcagtcttgtagtgacttgat---acatgagcagcgaatttctgtgatgttgctattactttgttgcactctgaacacgtgtacggtcca |
47285695 |
T |
|
| Q |
245 |
tatttcttgtgtggtaggctgtggattcttccatcattaata |
286 |
Q |
| |
|
| ||| ||||| ||||| ||||||||||| ||||||| |||| |
|
|
| T |
47285696 |
tgtttattgtgaggtagactgtggattctaccatcatcaata |
47285737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 56 - 281
Target Start/End: Original strand, 47307067 - 47307289
Alignment:
| Q |
56 |
ggaacaaaagtagttgttccatcattgagcttttgaatatgaagacgcggcctctttcgaatcctagaaatgtatctcttttttctgtcttcttcacttt |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | | ||| || |||||||| |||||||| ||||||||||||||| | ||||||||||||| |
|
|
| T |
47307067 |
ggaacaaaagtagttgttccatcattgagcttttggaatcggagatctggtctctttcggatcctagacatgtatctcttttttttctcttcttcacttt |
47307166 |
T |
|
| Q |
156 |
cgaacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaatattttgttgcattttgaacatgggtatggtccatatttcttgtg |
255 |
Q |
| |
|
| |||||||||| |||||| ||||| |||||||||||||||||||| | | || |||||| || |||| ||| | |||||||||| ||| ||||| |
|
|
| T |
47307167 |
ctgacttgtagtgtattgatg---catgactagcaaatttttgtgatgttgctagtactttgttacactttggacacgtatatggtccatttttattgtg |
47307263 |
T |
|
| Q |
256 |
tggtaggctgtggattcttccatcat |
281 |
Q |
| |
|
|| ||| |||||| |||| ||||||| |
|
|
| T |
47307264 |
tgatagactgtgggttctaccatcat |
47307289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 173
Target Start/End: Original strand, 2589546 - 2589674
Alignment:
| Q |
45 |
aagcaataacaggaacaaaagtagttgttccatcattgagcttttgaatatgaagacgcggcctctttcgaatcctagaaatgtatctcttttttctgtc |
144 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||||||||||||| | ||| || |||||||| ||| |||| ||||||||||||||||| || |
|
|
| T |
2589546 |
aagcaacaactggaacaaaagtagttgttccatcattgagcttttgaatccggagatttggtctctttcggatcttagacatgtatctcttttttctctc |
2589645 |
T |
|
| Q |
145 |
ttcttcactttcgaacttgtagtgacttg |
173 |
Q |
| |
|
|||| | |||| ||||||||||||||| |
|
|
| T |
2589646 |
ttctagagtttcagacttgtagtgacttg |
2589674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 138
Target Start/End: Complemental strand, 2589914 - 2589833
Alignment:
| Q |
57 |
gaacaaaagtagttgttccatcattgagcttttgaatatgaagacgcggcctctttcgaatcctagaaatgtatctcttttt |
138 |
Q |
| |
|
|||||||||| ||||||||| ||||||| ||||||||||||||| || |||||| | |||||||| |||||||||||||| |
|
|
| T |
2589914 |
gaacaaaagttgttgttccaacattgagtttttgaatatgaagatttggtctctttgggatcctagacatgtatctcttttt |
2589833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 10299617 - 10299735
Alignment:
| Q |
56 |
ggaacaaaagtagttgttccatcattgagcttttgaatatgaagacgcggcctctttcgaatcctagaaatgtatctc-ttttttctgtcttcttcactt |
154 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| || ||| || |||||| ||| |||| ||||||||| |||||||| |||||| | || |
|
|
| T |
10299617 |
ggaacaaaagtagttgttctatcattgagcttttgaatctggagatttggtctcttttagatcatagacatgtatctctttttttctctcttctagagtt |
10299716 |
T |
|
| Q |
155 |
tcgaacttgtagtgacttg |
173 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
10299717 |
tcagacttgtagtgacttg |
10299735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 258
Target Start/End: Complemental strand, 22222647 - 22222449
Alignment:
| Q |
58 |
aacaaaagtagttgttccatcattgagcttttgaatatgaagacgcggcctctttcgaatcctagaaatgtatctcttttttctgtcttcttcactttcg |
157 |
Q |
| |
|
|||||| || ||||||||| ||||||| |||||||| || ||| | |||||| | |||||||| ||||||||||||||||| ||||||| | |||| |
|
|
| T |
22222647 |
aacaaatgttgttgttccaacattgagtttttgaatctgcagatttgttctctttgggatcctagacatgtatctcttttttctttcttcttgagtttca |
22222548 |
T |
|
| Q |
158 |
aacttgtagtgacttgatgaaacatgattagcaaatttttgtgatgtttcaaata-ttttgttgcattttgaacatgggtatggtccatatttcttgtgt |
256 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||||||| |||||| || || |||||||||| |||| ||| | ||||| ||||| ||| |||||| |
|
|
| T |
22222547 |
aaattgtagtgacttgcc---acatgactagcaaatttttgggatgttgaaattacttttgttgcactttgcacacgtgtatgatccatgtttattgtgt |
22222451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 22222289 - 22222382
Alignment:
| Q |
57 |
gaacaaaagtagttgttccatcattgagcttttgaatatgaagacgcgg--cctctttcgaatcctagaaatgtatctcttttttctgtcttct |
148 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||| | ||| || |||||||| |||||||| ||||||||||||||| | |||||| |
|
|
| T |
22222289 |
gaacaaaagtagttgttccatcattgatcttatgaatccggagatttggtcactctttcggatcctagacatgtatctcttttttttctcttct |
22222382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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