View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18194_high_2 (Length: 453)
Name: NF18194_high_2
Description: NF18194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18194_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 129 - 299
Target Start/End: Complemental strand, 1380880 - 1380709
Alignment:
| Q |
129 |
taatgcatttccataaatagtacttcta--cggtgaaatgggggaaaa---tactaataaaaggaaacaaaacatgttaattttaaccactagtaatgtc |
223 |
Q |
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| T |
1380880 |
taatgcatttctagaaatagtacttgtgtccagtgaaatgggggaaaaggatactaatagaaggaaacaaaacatattaatcttaaccacttctatttac |
1380781 |
T |
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| Q |
224 |
cttcatgtgcatactaagccaaaccatacacactgcgaacaaacaaacttaatcttatccaacattgattctattt |
299 |
Q |
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| T |
1380780 |
ctccttgtgcatactaagtcaaaccatacacact----cccaacaaactcaatcttatccaactttgattctattt |
1380709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 7314185 - 7314113
Alignment:
| Q |
17 |
atgaactatataagtttagctcagattaaaaatattttaggctgaaacaaaggtttcaacaaaatatgctata |
89 |
Q |
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| T |
7314185 |
atgaacaatataaatttagctcagaatgaaaatattttaggctgcaacaaaggtttcaacaaaatatgctata |
7314113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 7314082 - 7313943
Alignment:
| Q |
159 |
gtgaaatgggggaaaa---tactaataaaaggaaacaaaacatgttaattttaaccactagtaatgtccttcatgtgcatactaagccaaaccatacaca |
255 |
Q |
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| T |
7314082 |
gtgaaatgggggaaaaggatactaatagaaggaaacacgacatattaatcttagccacttctatttacctccatgtgcatactaagtcaaaccatacaca |
7313983 |
T |
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| Q |
256 |
ctgcgaacaaacaaacttaatcttatccaacattgattctattt |
299 |
Q |
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| T |
7313982 |
ct----cccaacaaactcaatcttatccaactttgattctattt |
7313943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 434
Target Start/End: Complemental strand, 1380687 - 1380591
Alignment:
| Q |
337 |
acaatagatataagcagtaatggagtttgctttgaaggcgtttatttaaccatctcgaaaacaaaccgacgccaactacgccaaagggacaaaccaca |
434 |
Q |
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| T |
1380687 |
acaatagatataagcaaaaacagagtttg-tttgaaggcgtttatttaactatcttgaaatcaaactaaaaccaactacgctaaagagacaaaccaca |
1380591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 321 - 434
Target Start/End: Complemental strand, 7313936 - 7313825
Alignment:
| Q |
321 |
atcaacaaaacatcaaacaatagatataagcagtaatggagtttgctttgaaggcgtttatttaaccatctcgaaaacaaaccgacgccaactacgccaa |
420 |
Q |
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| T |
7313936 |
atcaacaaaacat-acacaatagatataagcaagaacggagtttg-tttgaaggtgtctatttaactatcttgaaatcaaaccaaaaccaactacgctaa |
7313839 |
T |
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| Q |
421 |
agggacaaaccaca |
434 |
Q |
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| T |
7313838 |
ggagacaaaccaca |
7313825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 289 - 330
Target Start/End: Complemental strand, 43061361 - 43061320
Alignment:
| Q |
289 |
tgattctatttactttgctgcaattttccaatatcaacaaaa |
330 |
Q |
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| T |
43061361 |
tgattgtatttactttgctgcaattttccaacatcaacaaaa |
43061320 |
T |
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