View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18194_low_1 (Length: 647)
Name: NF18194_low_1
Description: NF18194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18194_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 235 - 642
Target Start/End: Original strand, 18062005 - 18062418
Alignment:
| Q |
235 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttttctttatcactctcactatccgtttcaaatctgacttcaaatcta |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
18062005 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttttctttatcactatca------gtttcaaatctgacttcaaatcta |
18062098 |
T |
|
| Q |
335 |
acatcaaatctgtnnnnnnntctgtaatcaaatctataactggacttgtggaatttttcatttttatcctcctcctgcggannnnnnncaatgatattct |
434 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||||| |
|
|
| T |
18062099 |
acatcaaatctgtaatcaaatctgtaatcaaatctataactggacttgtgtaatttttcatttttatcctcctcctgcggattattctcattgttattct |
18062198 |
T |
|
| Q |
435 |
c------------tataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
522 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18062199 |
caatgatattatgtataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
18062298 |
T |
|
| Q |
523 |
actattactatcgctaactaaaaaagttttatcagatagtaaattcggtatgttcatgtctataactagaatactaacgagtcttgttacaaccctgaaa |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | | || |||||||||||| | |
|
|
| T |
18062299 |
actattactatcgctaactaaaaaagttttatcagatagtaaattcggtatgttcatgtctataactagaattctcactattgtttttacaaccctgaca |
18062398 |
T |
|
| Q |
623 |
tctacatgaatagtattatc |
642 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18062399 |
tctacatgaatagtattatc |
18062418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 423 - 642
Target Start/End: Original strand, 27008459 - 27008678
Alignment:
| Q |
423 |
caatgatattctctataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
522 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27008459 |
caatgatattatgtataatggaactatcaataaagatttcagaaagcatataaccttcaatacaactattaatgatattattccaatcatatatgaaata |
27008558 |
T |
|
| Q |
523 |
actattactatcgctaactaaaaaagttttatcagatagtaaattcggtatgttcatgtctataactagaatactaacgagtcttgttacaaccctgaaa |
622 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || || | | || |||||||||||| | |
|
|
| T |
27008559 |
actattactatcgctaactaaaaaagttttatcagatagtaaattagatatgttcatgtctataactagaattctcactattgtttttacaaccctgaca |
27008658 |
T |
|
| Q |
623 |
tctacatgaatagtattatc |
642 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
27008659 |
tctacgtgaatagtattatc |
27008678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 18061811 - 18061924
Alignment:
| Q |
14 |
tcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaagtgtcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18061811 |
tcagtatcactgtcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaagtgtcag |
18061910 |
T |
|
| Q |
114 |
tacccttttggagc |
127 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18061911 |
tacccttttggagc |
18061924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 55565971 - 55566067
Alignment:
| Q |
10 |
atcatcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaa |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55565971 |
atcatcagtatcattgtcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaa |
55566067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 55565924 - 55566004
Alignment:
| Q |
26 |
tcattttccggttctaaaatgtaactagccctttggagcttatcataatcatcagtatcattgtcattttccggttctaaa |
106 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55565924 |
tcattttccggttctaaaatgtaatgagccctttggatcttatcataatcatcagtatcattgtcattttccggttctaaa |
55566004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 18061870 - 18061939
Alignment:
| Q |
10 |
atcatcagtatcactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcatca |
79 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||| | || || |||||||| |||||||||||||| |
|
|
| T |
18061870 |
atcatcagtatcattgtcattttccggttctaaagtgtcagtacccttttggagcgtatcataatcatca |
18061939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 18061707 - 18061760
Alignment:
| Q |
28 |
attttccggttctaaaatgtaactagccctttgg-agcttatcataatcatcag |
80 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| |||||||||| |||||||| |
|
|
| T |
18061707 |
attttccggttctaaaatgtcactagccttttggtagcttatcatcatcatcag |
18061760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 235 - 275
Target Start/End: Original strand, 18061716 - 18061757
Alignment:
| Q |
235 |
ttctaaaatgtcactagccttttgg-agcttatcatcatcat |
275 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18061716 |
ttctaaaatgtcactagccttttggtagcttatcatcatcat |
18061757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 18061989 - 18062045
Alignment:
| Q |
21 |
cactgtcattttccggttctaaaatgtaactagccctttggagcttatcataatcat |
77 |
Q |
| |
|
|||||| |||| | ||||||||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
18061989 |
cactgtaatttacaggttctaaaatgtcactagccttttggagcttatcatcatcat |
18062045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 378 - 410
Target Start/End: Original strand, 27008402 - 27008434
Alignment:
| Q |
378 |
acttgtggaatttttcatttttatcctcctcct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27008402 |
acttgtggaatttttcatttttatcctcctcct |
27008434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 55566034 - 55566069
Alignment:
| Q |
10 |
atcatcagtatcactgtcattttccggttctaaaat |
45 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
55566034 |
atcatcagtatcattgtcattttccggttctaaaat |
55566069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 489
Target Start/End: Complemental strand, 9195603 - 9195565
Alignment:
| Q |
451 |
aataccgatttcagaaagcatataaccttcaatacaact |
489 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9195603 |
aataccgatttcagaaaggatataaccttcaatacaact |
9195565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University