View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18194_low_11 (Length: 317)
Name: NF18194_low_11
Description: NF18194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18194_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 136 - 310
Target Start/End: Complemental strand, 38498096 - 38497922
Alignment:
| Q |
136 |
atgattagggataaacttgagttgaaagctattaaagatggatcagtgagctatgctgcattggagaagaaggctgagttgtatgataagttagttaagg |
235 |
Q |
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| T |
38498096 |
atgattagggataaacttgagttgaaagctattaaagatggatcagtgagctatgctgcattggagaagaaggctgagttgtatgataagttagttaagg |
38497997 |
T |
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| Q |
236 |
gagaattgtctgatgaagaggataaagagaagtattgtgttgattttgttcgtaagagcgatgatcatgatgatg |
310 |
Q |
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| T |
38497996 |
gagaattgtctgatgaagaggataaagagaagtattgtgttgattttgttcgtaagagcgatgatcatgatgatg |
38497922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 38498231 - 38498130
Alignment:
| Q |
1 |
cagccaaacctgtcagaattgcttctaaagtggaaccaaacatacatttatatctttagataatacctaattgaatttctgtttgttgataattgagatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38498231 |
cagccaaacctgtcagaattgcttctaaagtggaaccaaacatacatttatatctttagataatacctaattgaatttgtgtttgttgataattgagatt |
38498132 |
T |
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| Q |
101 |
aa |
102 |
Q |
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|| |
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| T |
38498131 |
aa |
38498130 |
T |
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