View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18194_low_5 (Length: 451)
Name: NF18194_low_5
Description: NF18194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18194_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 53046031 - 53045830
Alignment:
| Q |
6 |
cggtctcagttggatgctctagactttcccaaattttgtgacaaaaccactaaactctttgattttcttcaattcaatttacttgagtaacacatttcac |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
53046031 |
cggtctcagttggatgctctagactttcccaaattttgtgacaaaaccactaaactctttgattttcttcatttcagtttacttgagtaacacatttcac |
53045932 |
T |
|
| Q |
106 |
tatctaccaccaaaacacactatctaaatccaattagaaatcaaacatgtttcgtaaccagtatgataccgacgcgacaacatggtcaccagctggaaga |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53045931 |
tatctaccaccaaaacacactatctaaatccaattagaaatcaaacaagtttcgtaaccagtatgataccgacgtgacaacatggtcaccagctggaaga |
53045832 |
T |
|
| Q |
206 |
ct |
207 |
Q |
| |
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|| |
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|
| T |
53045831 |
ct |
53045830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 170 - 427
Target Start/End: Complemental strand, 7134072 - 7133816
Alignment:
| Q |
170 |
gataccgacgcgacaacatggtcaccagctggaagacttattccaaatggtgtatgcgatggaagcagtgaagcaaggttccgctgcaataggtctccga |
269 |
Q |
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| T |
7134072 |
gataccgacgtaacaacatggtcaccggcgggaagactc-ttccaggtggaatacgccatggaagcagttaagcaaggttcagcagcaataggtctccga |
7133974 |
T |
|
| Q |
270 |
tctaagacgcatgtggttttcacctgcgttaacaaagcaaattccgaactatcctctcatcagaaaaagatctttaaggtcgacgatcacatcggtgttg |
369 |
Q |
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|| || || || |||||| || | || ||||||||||| ||||||||| |||| ||||||||||| |||||||||||||| || |||||||||||||||| |
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| T |
7133973 |
tccaaaactcacgtggttctcgcgtgtgttaacaaagccaattccgaattatcttctcatcagaagaagatctttaaggttgatgatcacatcggtgttg |
7133874 |
T |
|
| Q |
370 |
ctattgctggtcttactgctgatggccgtgttctttctcgctacatgacatctgaatg |
427 |
Q |
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| || || ||||| || || ||||||||||||||||| || ||||||| ||||||||| |
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| T |
7133873 |
ccatcgccggtctcaccgccgatggccgtgttctttcccggtacatgagatctgaatg |
7133816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 381
Target Start/End: Original strand, 20863244 - 20863385
Alignment:
| Q |
240 |
aagcaaggttccgctgcaataggtctccgatctaagacgcatgtggttttcacctgcgttaacaaagcaaattccgaactatcctctcatcagaaaaaga |
339 |
Q |
| |
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||||||||||| || |||||| |||||||||| || || || |||||| || | || ||||||||||| ||||||||| ||| |||||||||| |||| |
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| T |
20863244 |
aagcaaggttcagcagcaataagtctccgatccaaaactcacgtggttctcgcgtgtgttaacaaagccaattccgaattatattctcatcagatgaaga |
20863343 |
T |
|
| Q |
340 |
tctttaaggtcgacgatcacatcggtgttgctattgctggtc |
381 |
Q |
| |
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|||| ||||| || |||||||||| || || || ||||||| |
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| T |
20863344 |
tcttaaaggttgataatcacatcggggtcgccatcgctggtc |
20863385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 342
Target Start/End: Original strand, 3398973 - 3399087
Alignment:
| Q |
228 |
atggaagcagtgaagcaaggttccgctgcaataggtctccgatctaagacgcatgtggttttcacctgcgttaacaaagcaaattccgaactatcctctc |
327 |
Q |
| |
|
||||||||||| ||||||||| | || |||| || ||||||||| || || || |||||| | | || ||||||||||| ||||||||| |||| |||| |
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| T |
3398973 |
atggaagcagttaagcaaggtccagcagcaacagatctccgatccaaaactcacgtggttcccgcgtgtgttaacaaagccaattccgaattatcttctc |
3399072 |
T |
|
| Q |
328 |
atcagaaaaagatct |
342 |
Q |
| |
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|||||| ||||||| |
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|
| T |
3399073 |
gtcagaagaagatct |
3399087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 342
Target Start/End: Original strand, 3399204 - 3399318
Alignment:
| Q |
228 |
atggaagcagtgaagcaaggttccgctgcaataggtctccgatctaagacgcatgtggttttcacctgcgttaacaaagcaaattccgaactatcctctc |
327 |
Q |
| |
|
||||||||||| ||||||||| | || |||| || ||||||||| || || || |||||| | | || ||||||||||| ||||||||| |||| |||| |
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| T |
3399204 |
atggaagcagttaagcaaggtccagcagcaacagatctccgatccaaaactcacgtggttcccgcgtgtgttaacaaagccaattccgaattatcttctc |
3399303 |
T |
|
| Q |
328 |
atcagaaaaagatct |
342 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
3399304 |
gtcagaagaagatct |
3399318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 342
Target Start/End: Original strand, 3399435 - 3399549
Alignment:
| Q |
228 |
atggaagcagtgaagcaaggttccgctgcaataggtctccgatctaagacgcatgtggttttcacctgcgttaacaaagcaaattccgaactatcctctc |
327 |
Q |
| |
|
||||||||||| ||||||||| | || |||| || ||||||||| || || || |||||| | | || ||||||||||| ||||||||| |||| |||| |
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| T |
3399435 |
atggaagcagttaagcaaggtccagcagcaacagatctccgatccaaaactcacgtggttcccgcgtgtgttaacaaagccaattccgaattatcttctc |
3399534 |
T |
|
| Q |
328 |
atcagaaaaagatct |
342 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
3399535 |
gtcagaagaagatct |
3399549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 3399648 - 3399760
Alignment:
| Q |
228 |
atggaagcagtgaagcaaggttccgctgcaataggtctccgatctaagacgcatgtggttttcacctgcgttaacaaagcaaattccgaactatcctctc |
327 |
Q |
| |
|
||||||||||| ||||||||| | || |||| || ||||||||| || || || |||||| | | || ||||||||||| ||||||||| |||| |||| |
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| T |
3399648 |
atggaagcagttaagcaaggtccagcagcaacagatctccgatccaaaactcacgtggttcccgcgtgtgttaacaaagccaattccgaattatcttctc |
3399747 |
T |
|
| Q |
328 |
atcagaaaaagat |
340 |
Q |
| |
|
|||||| ||||| |
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|
| T |
3399748 |
gtcagaagaagat |
3399760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 361
Target Start/End: Original strand, 3399899 - 3400005
Alignment:
| Q |
255 |
gcaataggtctccgatctaagacgcatgtggttttcacctgcgttaacaaagcaaattccgaactatcctctcatcagaaaaagatctttaaggtcgacg |
354 |
Q |
| |
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||||||||||||||||| || || || |||||| || | || ||||||||||| ||||||||| ||| | |||||||| |||||||| ||| | || | |
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| T |
3399899 |
gcaataggtctccgatccaaaactcacgtggttctcgcgtgtgttaacaaagccaattccgaattatattatcatcagacgaagatcttcaagattgatg |
3399998 |
T |
|
| Q |
355 |
atcacat |
361 |
Q |
| |
|
||||||| |
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|
| T |
3399999 |
atcacat |
3400005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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