View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18194_low_7 (Length: 364)
Name: NF18194_low_7
Description: NF18194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18194_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 20632978 - 20633335
Alignment:
| Q |
1 |
atgcatcagaatcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagta |
100 |
Q |
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| T |
20632978 |
atgcatcagaatcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagta |
20633077 |
T |
|
| Q |
101 |
atctacatttagagaaacactaaagttatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataa |
200 |
Q |
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| T |
20633078 |
atctacatttagagaaacactaaagttatgcagaagagtgaagttaccggcagtgacagataagaaagcttttgagatgttgaagtccaaataagaaaaa |
20633177 |
T |
|
| Q |
201 |
gggtagaaatgaaggcgaatgaatttcggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcag |
300 |
Q |
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| T |
20633178 |
gggtagaaatgaaggcgaatgaatttcggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcag |
20633277 |
T |
|
| Q |
301 |
gaatggattcaagatttgaagaaagtgcttttgctgttaaggacttgttgatgatgtc |
358 |
Q |
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| T |
20633278 |
gaatggattcaagatttgaagaaagtgcttttgctgttaaggacttattgatgatgtc |
20633335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 20649077 - 20649428
Alignment:
| Q |
1 |
atgcatcagaatcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
20649077 |
atgcatcagaatcatttgatgatggagtgaaagtaagttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagta |
20649176 |
T |
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| Q |
101 |
atctacatttagagaaacactaaagttatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| || |
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| T |
20649177 |
atctacatttagagaaacactaaagttatgcagaagagtgaagttaccagcagtgacagataagaaagcttttgagatattgaaattcaaataagaaaaa |
20649276 |
T |
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| Q |
201 |
gggtagaaatgaaggcgaatgaatttcggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcag |
300 |
Q |
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| T |
20649277 |
gggtagaaatgaaggcgaatgaatttcggaccggaagttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcag |
20649376 |
T |
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| Q |
301 |
gaatggattcaagatttgaagaaagtgcttttgctgttaaggacttgttgatgat |
355 |
Q |
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||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20649377 |
gaatggattgaagatttgaag---gtgcttttgctgttaaggacttgttgatgat |
20649428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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