View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18194_low_8 (Length: 351)
Name: NF18194_low_8
Description: NF18194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18194_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 17075736 - 17075396
Alignment:
| Q |
1 |
ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg |
100 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| || ||||| ||||| ||| ||| |||||||||| | | |||| |
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| T |
17075736 |
ttctcatttccatgcactgccacccaattaacccaatcattgttaacggaccccgatgacgaactaccatccgaagctcccgaagaaaccacttttaccg |
17075637 |
T |
|
| Q |
101 |
cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttctt |
200 |
Q |
| |
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|||||||||| || ||||| ||||||||||||||| ||||||||||||| ||||| ||||| | || || |||||||| |||| |||||||||||| || |
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| T |
17075636 |
cctttttaaggcgttccgagccttgtaattttctcaatttagattttaagatgtgtaaaactgaggaacgatctttgctaggcagccgcgccaccttttt |
17075537 |
T |
|
| Q |
201 |
caaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcaccactttcttaaccttc |
300 |
Q |
| |
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|| ||||| ||||| || ||||||||||| ||||||||||||| ||| |||| || | |||||||| |||| |||||||||||||||||||||||| |
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| T |
17075536 |
cagactaatcaccgagtgtcgcaaaattccgttcactttcttccgcttgttaacgatggtactggattgtgcaatgggccgcaccactttcttaaccttc |
17075437 |
T |
|
| Q |
301 |
tttcttgtcgaagaaataacaccagcgactccatgatgatg |
341 |
Q |
| |
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|| |||| ||||||||||||||||||| | |||| |||||| |
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|
| T |
17075436 |
ttccttgccgaagaaataacaccagcgtcaccattatgatg |
17075396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 341
Target Start/End: Complemental strand, 11053702 - 11053470
Alignment:
| Q |
109 |
agacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttcttcaaactaa |
208 |
Q |
| |
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||||| || |||||||||||||| ||||||||||||||||| || || |||| || || ||| |||||||| ||||||||||||||||| |||||||||| |
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| T |
11053702 |
agacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaatggtggaccgatctttgctaggcaaccgcgccacctttttcaaactaa |
11053603 |
T |
|
| Q |
209 |
ataccgaatgccgcaaaattccattcactttcttcctctttataactattga-actggatttagcaaaaggccgcaccactttcttaaccttctttcttg |
307 |
Q |
| |
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||||| ||||||| || |||||||||||||||| || | | | || || ||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
11053602 |
tcaccgagtgccgcagaaccccattcactttcttccgattgtttgc-acagataccggattgggcaataggccgcaccactttcttaaccttctttcttg |
11053504 |
T |
|
| Q |
308 |
tcgaagaaataacaccagcgactccatgatgatg |
341 |
Q |
| |
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||| ||||||||||||||| | ||||||||||| |
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| T |
11053503 |
ccgatgaaataacaccagcgtcaccatgatgatg |
11053470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 11064148 - 11064036
Alignment:
| Q |
1 |
ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| || || |||||| ||| |||||| || ||||| |
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|
| T |
11064148 |
ttctcattctcatgcactgccacccaattgacccaatcattattaaccgatcccgacgaggaactaccttccgaaacttccgaggaaaccaccttaacca |
11064049 |
T |
|
| Q |
101 |
cctttttaagacg |
113 |
Q |
| |
|
||||||||||||| |
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|
| T |
11064048 |
cctttttaagacg |
11064036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 17683923 - 17684263
Alignment:
| Q |
1 |
ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| || || ||||||| ||| |||||| || | ||| |
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|
| T |
17683923 |
ttctcattcccatgcactgccacccaattaacccaatcattattaaccgacctcgacgaggaactaccttccgaaactcccgaggaaaccacctttacca |
17684022 |
T |
|
| Q |
101 |
cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttctt |
200 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||||||||||||||| || || ||||||| || ||| |||||||| |||||| |||||||||| || |
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|
| T |
17684023 |
cctttttaagacggtctgaaccttgtaatttcctcgatttagattttaagatatgtaaaacggtggaccgatctttgctaggcaactgcgccaccttttt |
17684122 |
T |
|
| Q |
201 |
caaactaaataccgaatgccgcaaaattccattcactttcttcc---tcttt--ataactattgaactggatttagcaaaaggccgcaccactttcttaa |
295 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||| | ||| | || ||| | | |||| || |||||||||||||||| | | |
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|
| T |
17684123 |
caaactaatcaccgagtgccgcaaaaccccattcactttcttccgtttgtttgcacaaatatcggattgga-----aaataggccgcaccactttcctga |
17684217 |
T |
|
| Q |
296 |
ccttctttcttgtcgaagaaataacaccagcgactccatgatgatg |
341 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| | ||||||||||| |
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|
| T |
17684218 |
ccttctttcttgccgatgaaataacaccagcgtcaccatgatgatg |
17684263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 36159905 - 36160065
Alignment:
| Q |
1 |
ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg |
100 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| |||||||| || | || || ||||| ||||||| ||| |||||| || || | |||| |
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|
| T |
36159905 |
ttctcattcccatgcacaaccacaaaattaacccaatcgttgttaactgaacatgaagaagaacttttatctgaagctcccgaagaccccaccttcaccg |
36160004 |
T |
|
| Q |
101 |
cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaac |
161 |
Q |
| |
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||||||| ||||||||||| || ||||||||||| | ||||||||||| |||||||||||| |
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| T |
36160005 |
cctttttcagacgatccgacccatgtaattttctagctttagattttagaatgtgcaaaac |
36160065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 10559986 - 10559739
Alignment:
| Q |
1 |
ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | || ||||| || ||||| ||||||||| ||| |||||||||| || | |||| |
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|
| T |
10559986 |
ttctcattcccatgcactgccacccaattaacccaatcattgttatctgaacccgaggaagaactaccatctgaagctcccgaagaaaccacctttaccg |
10559887 |
T |
|
| Q |
101 |
cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttctt |
200 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||||| || | |||||||| |||| | || ||||||| || |
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|
| T |
10559886 |
cctttttgagacgatctgatccttgtaattttctcgatttagattttaagatgtgtaaaacggtggattgatctttgctaggcagctgccccaccttttt |
10559787 |
T |
|
| Q |
201 |
caaactaaataccgaatgccgcaaaattccattcactttcttcctctt |
248 |
Q |
| |
|
|||||||| ||||| ||||||| || |||||||||||||||||||| |
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|
| T |
10559786 |
caaactaatcaccgagtgccgcagaaacccattcactttcttcctctt |
10559739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 10558490 - 10558419
Alignment:
| Q |
271 |
gcaaaaggccgcaccactttcttaaccttctttcttgtcgaagaaataacaccagcgactccatgatgatgt |
342 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
10558490 |
gcaataggccgcaccactttcttaaccttctttcttgccgaagaaataacaccagcgtcaccatgatgatgt |
10558419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 26741553 - 26741893
Alignment:
| Q |
1 |
ttctcattcccatgcactgccacccaattaacccaatcattgttaaccgaccccgacgaggaactcccatctgaaactctcgaagaaaccgccctaaccg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||| || ||||| || ||||| ||||| ||| ||| |||||||||| |||| || | |
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|
| T |
26741553 |
ttctcattcccatgcacttccacccaattaacccaatcgttgttaactgaacccgaggaagaactaccatccgaagctcccgaagaaaccacccttacag |
26741652 |
T |
|
| Q |
101 |
cctttttaagacgatccgaaccttgtaattttctcgatttagattttaaaatgtgcaaaacggcggcccggtctttgctgggcaaccgcgccaccttctt |
200 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| | || || ||||||| ||||| ||| ||||||| || |
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|
| T |
26741653 |
ccttcttaagacgatccgatccttgtaattttctcgacttagattttaagatgtgtaaaactgtggaacgatctttgcagggcagccgatccaccttttt |
26741752 |
T |
|
| Q |
201 |
caaactaaataccgaatgccgcaaaattccattcactttcttcctctttataactattgaactggatttagcaaaaggccgcaccactttcttaaccttc |
300 |
Q |
| |
|
|||||||| |||| | ||| || || ||||||||||||||| ||| |||| | | || |||| ||||| |||| || ||||| ||||||||||| |
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|
| T |
26741753 |
caaactaatcaccgggttccgtaagatctcattcactttcttccgcttgttaacaaaggtacatgattgagcaataggctgcgccactctcttaaccttc |
26741852 |
T |
|
| Q |
301 |
tttcttgtcgaagaaataacaccagcgactccatgatgatg |
341 |
Q |
| |
|
|| || | ||| |||||||||||||| | ||||||||||| |
|
|
| T |
26741853 |
ttcctagccgatgaaataacaccagcatcaccatgatgatg |
26741893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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