View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_12 (Length: 424)
Name: NF18195_high_12
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 416
Target Start/End: Original strand, 4783664 - 4784081
Alignment:
| Q |
3 |
caattgaagatatggtcgttgaaaatgaatttactttggtaacatctaaatcacaaatatataaattgaagaaacactaaaacnnnnnnnnn-------- |
94 |
Q |
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| T |
4783664 |
caattgaagatatggtcgttgaaaatgaatttactttggtaacatctaaatcacaaatatataaattgaagaaacactaaaacaaaacaaaaaaacaaaa |
4783763 |
T |
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| Q |
95 |
---ctgtctctagaagctgagcaataaaactaattaaacttaaaatatggtctagtctcccataataaaactctaccttatatagaatattgaaagtaga |
191 |
Q |
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| T |
4783764 |
aaactgtctctagaagctgagcaataaaactaa----acttaaaatatggtctagtctcccataataaaactctaccttatatagaatattgaaagtaga |
4783859 |
T |
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| Q |
192 |
tatatatttgaccnnnnnnnngtatatattatgtatatattgttgttttaatgattattattgaatttgaccaccaattgttttgccaattcattcacta |
291 |
Q |
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| T |
4783860 |
tatatatttgaccaaaaaaaagaatatattatgtatatattgttgttttaatgattattattaaatttgaccaccaattgttttgccaattcattcacta |
4783959 |
T |
|
| Q |
292 |
taaatacatggtaataccaggaaaacaca-ttttctatactacgttttgttaaccactccaaatcttttacnnnnnnnnnnnnnctactacaaatcagtt |
390 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
4783960 |
taaatacatggtaataccaggaaaacacatttttctatactacgttttgttaaccactccaaatcttttac----aaaaaaaaactactccaaatcagtt |
4784055 |
T |
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| Q |
391 |
ggttttaatcaaactttgatgatgtc |
416 |
Q |
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| T |
4784056 |
ggttttaatcaaactttgatgatgtc |
4784081 |
T |
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