View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_13 (Length: 409)
Name: NF18195_high_13
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 6 - 394
Target Start/End: Complemental strand, 10089370 - 10088979
Alignment:
| Q |
6 |
gacatcatcattcattacaaaccccttattaacaatgttttagtagcatatttgtttacatnnnnnnnnnnnnta---taacagcataatttggtttaaa |
102 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
10089370 |
gacaccatcattcattacaaaccccttattaacaatgttttagtagcatatttgtttacataaaaaaaaataaaaatgtaacagcataatttggtttaaa |
10089271 |
T |
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| Q |
103 |
taaacaaatggacatgccataaagtgaagatctgaacatttgtcataaaataagtcaaaataaattcttctaacagtctcaaaggaagtgagactagaat |
202 |
Q |
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| T |
10089270 |
taaacaaatggacatgccataaagtgaagatctgaacatttgtcataaaataagtcaaaataaattcttctaacagtctcaaaggaagtgagactagaat |
10089171 |
T |
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| Q |
203 |
ttggcaaagataggttataatttgttagggagagatgtttggagcttgaacttgtaagtactagcttccccaacagggaaagataaatctgataactttc |
302 |
Q |
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| T |
10089170 |
ttggcaaagataggttataatttgttagggagaggtgtttggagcttgaacttgtaagtactagcttccccaacagggaaagataaatctgataactttc |
10089071 |
T |
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| Q |
303 |
catgagctctcttgttatcataaccaggatagtcatctttgaagaatggaacagcttggtgtaagaacagtcctctcttttctgcttttctt |
394 |
Q |
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| T |
10089070 |
catgagctctcttgttatcataaccaggatagtcatctttgaagaatggaacagcttggtgtaagaacagtcctctcttttctgcttttctt |
10088979 |
T |
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