View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_14 (Length: 388)
Name: NF18195_high_14
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_14 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 40869975 - 40870339
Alignment:
| Q |
10 |
attattcttaacttcaaaaaattgaaaatcatccataagcttcctcttacaagaaacgaacggcttcggttttctcggcgccggcggacaatcctgtatc |
109 |
Q |
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| T |
40869975 |
attattcttaacttcaaaaaattgaaaatcatccataagcttcctcttacaagaaacgaacggcttcggttttctcggcgccggcggacaatcatgtatc |
40870074 |
T |
|
| Q |
110 |
tccggtatcttgctttctttcgacgtcggagtccggtaactctcatcgatttcaccgtcaacaacagcaccgtcaacgttttctttctcaatttcaggtt |
209 |
Q |
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| T |
40870075 |
tccggtatcttgctttctttcgacgtcggagtccggtaactctcatcgatttcaccgtcaacaacagcaccgtcaacgttctctttctcaatttcaggtt |
40870174 |
T |
|
| Q |
210 |
ctattatagccgacgacgacatcgtgtcggccacatcagggagttgatcggaggaaggagtgacta---cgtcgtcgtcgtcgagattgtcgacggcggc |
306 |
Q |
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| T |
40870175 |
ctattatagccgacgacgacatcgtgtcggccacatcagggacttgatcggaggaaggagtgactacgtcgtcgtcgtcgtcgagattgtcgacggcggc |
40870274 |
T |
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| Q |
307 |
agagattcgaagtgttggtaattgctggaggtgaagatcagtagacatggtttaagcggagtttg |
371 |
Q |
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| T |
40870275 |
agagattcgaagtgttggtaattgctggaggtgaagatcagtagacatggtttaagcggtgtttg |
40870339 |
T |
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