View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_15 (Length: 386)
Name: NF18195_high_15
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 368
Target Start/End: Original strand, 18640393 - 18640749
Alignment:
| Q |
12 |
atcatcatgcaattatgttgatgnnnnnnnnccgtgacaggtccacatatccatggaacgaaatacataaaatacataaaaagcaagaaacaggtaatgc |
111 |
Q |
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| T |
18640393 |
atcatcatgcaattatgttgatgaaaaaaaaccgtgacaggtccacatatccatggaacgaaatacataaaatacataaaaagcaagaaacaggtaatgc |
18640492 |
T |
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| Q |
112 |
caaggaaatgaaattcatgcttcatataaattgaaaaagcaatacatagtccgcacagttagactcaaaagataagttcacagatagatagtgaaaagag |
211 |
Q |
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| T |
18640493 |
caaggaaatgaaattcatgcttcatataaattgaaaaagcaatacatagtccgcacagttagactcaaaagataagttcacagatagatagtgaaaagag |
18640592 |
T |
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| Q |
212 |
aattcttgcaatataagacctttgaaacgtgcgaaataggagacttgctgtagaagagagttaaatcttctgctgatggtgcttcactaaagcaatctct |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18640593 |
aattcttgcaatataagacctttgaaacgtgcgaaataggagacttgctgtagaagagagttaaatcttctgctgatggtgcttcactaaagcaatctct |
18640692 |
T |
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| Q |
312 |
tgcagttgttccaaaggcctctacatagcaccaatcaggtatatcagttgtgccaac |
368 |
Q |
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| T |
18640693 |
tgcagttgttccaaaggcctctacatagcaccaatcaggtatatcagttgtgccaac |
18640749 |
T |
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