View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18195_high_17 (Length: 378)
Name: NF18195_high_17
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 12 - 361
Target Start/End: Original strand, 40057458 - 40057811
Alignment:
| Q |
12 |
atgaatttgttcctcaagctgtccatacaagaaaatagttttcacatcaatcaattccctcacgttatgtgaatcctcttgctttgaatctggaatttca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40057458 |
atgaatttgttcctcaagctgtccatacaagaaaatagttttcacatcaatcaattccctcacgttatgtgaatcctcttgctttgaatctggaatttca |
40057557 |
T |
|
| Q |
112 |
atccatgtaa----ctccctcttttagtttgaataatcatatgcagctcatattcttcatgcgtttaggcttgttaaccagtagccaaataccattttta |
207 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
40057558 |
atccatgtaattaactccctcttttagtttgaataatcatatgcagctcatattcttcatgcgtttaggcttgttaactagtagccaagtaccattttta |
40057657 |
T |
|
| Q |
208 |
tgcaaggaacttaattcctcttcaattgatgcaatccattctcgagatttgctggcattcacaaatccatcttaatttataggctcatctccatctattt |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40057658 |
tgcaaggaacttaattcctctttcattgatgcaatccattctcgagatttgctggcattcacaaatccatcttaatttacaggctcatctccatctattt |
40057757 |
T |
|
| Q |
308 |
ctccacttaccactacttatttcttctactatagtcaattttccagtgtagtgt |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40057758 |
ctccacttaccactacttatttcttctactatagtcaattttccagtgtagtgt |
40057811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University