View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_19 (Length: 360)
Name: NF18195_high_19
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 47441539 - 47441182
Alignment:
| Q |
1 |
actaacgtggttattcacttattctgggaaggaaatttgtaatgagtgtttggttttccccaaatcatatgctgaccttgaacttacaagctgtgtcgtc |
100 |
Q |
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| T |
47441539 |
actaacgtggttattcacttattctgggaaggaaatttgtaatgagtgtttggttttctccaaatcatatgctgaccttgaacttacaagctgtgtcgtc |
47441440 |
T |
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| Q |
101 |
aattttgaagatttaaaggaatagcatggtggtgtttagtagttgaacgtccgttctgtggca-------tgttttttcttgtttataaattataatagt |
193 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47441439 |
aattttgaagatttaaaggaatggcatggtggtgtttagtagttgaatgtccgttctgtggcaagtggcatgttttttcttgtttataaattataatagt |
47441340 |
T |
|
| Q |
194 |
ccattttgagcatgcactggggtgctcaaaatatggaaatggtatttgcagcattcagacggaccttgtagattttatttgtgcattatatgttgtgaca |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47441339 |
ccattttgagcatgcactggggtgctcaaaatatggaaatggtatttgcagcgttcagacggaccttgtagattttatttgtgcattatatgttgtgaca |
47441240 |
T |
|
| Q |
294 |
ctaaatgataagtattgctatttttcccattcgagtctttgaaagatattgtgatgat |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47441239 |
ctaaatgataagtattgctatttttcccattcgagtctttgaaagatattgtgatgat |
47441182 |
T |
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