View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_24 (Length: 340)
Name: NF18195_high_24
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 10496996 - 10496686
Alignment:
| Q |
1 |
tatgcagaacttaaaccttcatatttctacgacaaaatttctttcaaaaataatatttctacgacaaaacttgatagaatgcggggctatagtcattgga |
100 |
Q |
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| T |
10496996 |
tatgcagaacttaaaccttcacatttttacgacaaaatttctttcaaaaataatttttctaggacaaaacttgatagaatgcggggctatagtcattgga |
10496897 |
T |
|
| Q |
101 |
catgaatctcatagaacttggattttctaataaaagaaatttgnnnnnnnnnnnctaaatctaatggtctctccacaattgttaaccgtgcatcgagatc |
200 |
Q |
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| T |
10496896 |
catgaatctcatagaacttggattttctaataaaagaaaattg----tttttttctaaatctaatgg--tctccacaattgttaacagtgcatcgagatc |
10496803 |
T |
|
| Q |
201 |
catacaaatagttgtttgaatttagttctatcaaaagccatttaaaagctttgtctttcaccacttttcaaaagtgattaacacagtaaagcattagata |
300 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
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| T |
10496802 |
catacaaatagttg-------------ctatcaaaagcgatttaaaagctttgtctttgaccacttttcaaaagtgattaacacaataaagcattagata |
10496716 |
T |
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| Q |
301 |
agttcatagaaaatgaacttgaaaagaaag |
330 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10496715 |
tgttcatagaaaatgaacttgaaaagaaag |
10496686 |
T |
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