View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_25 (Length: 325)
Name: NF18195_high_25
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 34674384 - 34674084
Alignment:
| Q |
11 |
cagagacattagaggaatgaattaggtcatgaataggaccttataatattttaannnnnnnnctacattttgataacaaatgagtgccgtgaaatttaat |
110 |
Q |
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| T |
34674384 |
cagagacattagaggaatgaattaggtcatgaataggaccttataatattttaattttttttcaacattttgataacaaatgagtgccgtgaaatttaat |
34674285 |
T |
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| Q |
111 |
ataaggacgtactcaatattggtctcttctgataacatttagaaaaagggcccttatcttgcgcactatagatatgttagtagaaaattgcttttcttt- |
209 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
34674284 |
ataaggacgtactcagtattggtctcttctgataacatttagaaaaagagcccttatcttgcgcactatacatatgttagtagaaagttgcttttcttta |
34674185 |
T |
|
| Q |
210 |
-atatgtcctaactcaattagttcttaatctagcatttaaaatttgcttgttgcaacaatgtaacttaattatcctactttgccaaaccattcgtacata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34674184 |
tatatgtcctaactcaattagttcttaatctagcatttaaaatttgcttgttgcaacaatgtaacttaattatcctactttgccaaaccattcgtacata |
34674085 |
T |
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| Q |
309 |
t |
309 |
Q |
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| T |
34674084 |
t |
34674084 |
T |
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