View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_27 (Length: 314)
Name: NF18195_high_27
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 42443781 - 42443486
Alignment:
| Q |
5 |
actcatcaaattcatgaactaattaagttcgatgaatcaattatcgaatcaaatctcgaatta-tttcgaatagattagtctcaagttttaagctcctat |
103 |
Q |
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| T |
42443781 |
actcatcaaattcctgaactaattaagttcgatgaatcaattatcgaatcaagtctcaaactaatttcgagtagattaatctcaaattttaagcttctat |
42443682 |
T |
|
| Q |
104 |
gatgaaataaacatgttcaccttcacgtgcatctagagatgaatgaggacatgacaggcagatagtgcaatgtttgcattgtagccatgaccagttgttg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42443681 |
gatgaaataaacatgttcaccttcacgtgcatctagagatgaatgaggacatgacaagcagatagtgcaatgtttgctttgtagccatgaccagttgtta |
42443582 |
T |
|
| Q |
204 |
ttaatatatgttttatttgtattagttagacctattaattttttcacttttgacaaaacttattaatttattactttcttccttttaccata-cctcctt |
302 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
42443581 |
ttaatatatgttttatttgtattagttagacctattatttttttcactttcgacaaaactt--------attactttcttccttttaccataccctcctt |
42443490 |
T |
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