View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_28 (Length: 311)
Name: NF18195_high_28
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_28 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 34419382 - 34419072
Alignment:
| Q |
1 |
actattacaagctttatttctaattgctgaataatcatgacataaaaacaacttatgacttttatgttgtcatttcaggagctggagtatttgggcacct |
100 |
Q |
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| T |
34419382 |
actattacaagctttatttctaattgctgaataatcatgacataaaaacaacttatgacttttatgttgtcatttcaggagctggagtatttggacacct |
34419283 |
T |
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| Q |
101 |
ttcagattcatcactaggaagaaagggttctctcatagttgtttgtgccctaaacaccatatttggctgcttaacagcattctctcctaattattggatc |
200 |
Q |
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| T |
34419282 |
ttcagattcatcactaggaagaaagggttctctcatagttgtttgtgccctaaacaccatatttggctgcttaacagcattctcccctaattattggatc |
34419183 |
T |
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| Q |
201 |
tatgtcctcctccgcctcctcaccggtttcagcactggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419182 |
tatgtcctcctccgcctcctcaccggtttcagcactggcggtgttggcctttgcgccttcgtccttgccaccgagcccattggcccatcaaaacgtggca |
34419083 |
T |
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| Q |
301 |
tggcaggaatg |
311 |
Q |
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||||||||||| |
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| T |
34419082 |
tggcaggaatg |
34419072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 72 - 311
Target Start/End: Complemental strand, 34431560 - 34431321
Alignment:
| Q |
72 |
atttcaggagctggagtatttgggcacctttcagattcatcactaggaagaaagggttctctcatagttgtttgtgccctaaacaccatatttggctgct |
171 |
Q |
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| T |
34431560 |
atttcaggagctggagtgtttggtcacctttcagactcttctctaggaagaaaaggttccctcaaagtggtttgttccctaaatgccatttttggctgtt |
34431461 |
T |
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| Q |
172 |
taacagcattctctcctaattattggatctatgtcctcctccgcctcctcaccggtttcagcactggcggtgttggcctttgcgccttcgtccttgccac |
271 |
Q |
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| T |
34431460 |
taacagcattctcccctaactattggacctatgtcttcctccgcctcctcaccggttttagcaatggtggtgttggcctttgcgccttcgtcctcgctac |
34431361 |
T |
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| Q |
272 |
cgagcccattggcccatcaaaacgtggcatggcaggaatg |
311 |
Q |
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|| || ||||||| |||||||||||||||||||||||| |
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| T |
34431360 |
tgaacctattggccattcaaaacgtggcatggcaggaatg |
34431321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 31612478 - 31612548
Alignment:
| Q |
208 |
tcctccgcctcctcaccggtttcagcactggcggtgttggcctttgcgccttcgtccttgccaccgagccc |
278 |
Q |
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|||||||| ||||||| ||||||||||| || || || ||||| ||||||||||| |||||||| |||||| |
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| T |
31612478 |
tcctccgcttcctcactggtttcagcacaggtggcgtcggcctctgcgccttcgtacttgccacagagccc |
31612548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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