View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_3 (Length: 653)
Name: NF18195_high_3
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 558; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 16 - 635
Target Start/End: Complemental strand, 38318876 - 38318240
Alignment:
| Q |
16 |
atgaaactacaagcaataagcaacttatacatcagtttgttgtcatgacaacaagaaactataaatctgagctactacaaccataagaagtaacagaagc |
115 |
Q |
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| T |
38318876 |
atgaaactacaagcaataagcaacttatacatcagtttgttgtcatgacaacaagaaactataaatctgagctactacaaccataagaagtaacagaagc |
38318777 |
T |
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| Q |
116 |
cacgttttggtagaatggaaacatatattcaaattatatgatgcatgttagatagataggatagcagggacaagaaagttaaggttaatgaaa------- |
208 |
Q |
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| T |
38318776 |
cacgttttggtagaatggaaacatatattcaaattatatgatgcatgttagatagataggatagcagggacaagaaagttaaggttaatgaaaaaggcaa |
38318677 |
T |
|
| Q |
209 |
---ccattggcagcaagtgaaaaaaggtgcaagacaataccggaaacttttaatctcagaagccaaaaccactagaagtagttaaaatcctttaaagttt |
305 |
Q |
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| T |
38318676 |
ccaccattggcagcaagtgaaaaaaggtgcaagacaataccggaaacttttaatctcagaagccaaaaccactagaagtagttaaaatcctttaaagttt |
38318577 |
T |
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| Q |
306 |
a-gagttgcaaccaaaaatctttgtactgtttcaatttctaatacatgcataggctatgttgaacaaaccttgtaattgtattcttgaagctctgcagct |
404 |
Q |
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| T |
38318576 |
aagagttgcaaccaaaaatctttgtactgtttcaatttctaatacatgcataggctatgttgaacaaaccttgtaattgtattcttgaagctctgcagct |
38318477 |
T |
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| Q |
405 |
agaaagtactattctttcttcttcagtagttggagtgttgttggatttcacacttcacacaaatggttgaccgttaaaa-caaaatcaattttattgctt |
503 |
Q |
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| T |
38318476 |
agaaagtactattctttctacttcagtagttggagtgttgttggatttcacacttcacacaaatggttgaccgttaaaagcaaaatcaattttattgctt |
38318377 |
T |
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| Q |
504 |
gggagtaatggtttggagattggtataaccaaaaccaggatcaaaataaacacaaaaataaggaatgatttcaaacagatccaaatttgataaaagag-- |
601 |
Q |
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| T |
38318376 |
gggagtaatggtttggagattggtataaccaaaaccaggatcaaaataaacacaaaaataaggaatgatttcatacagatccaaatttgataaaagagaa |
38318277 |
T |
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| Q |
602 |
---atccacatattacaagttaaaacaagtctacaat |
635 |
Q |
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| T |
38318276 |
caaatccacatattacaagttaaaacaagtctacaat |
38318240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 313 - 386
Target Start/End: Complemental strand, 38322700 - 38322631
Alignment:
| Q |
313 |
caaccaaaaatctttgtactgtttcaatttctaatacatgcataggctatgttgaacaaaccttgtaattgtat |
386 |
Q |
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| T |
38322700 |
caaccaaaaatctatgaactgtttcaatttctagtacat----aagccatgttgaacaaaccttgtaattgtat |
38322631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 141 - 187
Target Start/End: Complemental strand, 38322894 - 38322848
Alignment:
| Q |
141 |
tattcaaattatatgatgcatgttagatagataggatagcagggaca |
187 |
Q |
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| T |
38322894 |
tattaaaatcatatgatgcatgtgagatagataggatatcagggaca |
38322848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 323
Target Start/End: Complemental strand, 38315432 - 38315395
Alignment:
| Q |
286 |
gttaaaatcctttaaagtttagagttgcaaccaaaaat |
323 |
Q |
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| T |
38315432 |
gttaaaattctttaaagtttagacttgcaaccaaaaat |
38315395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 271 - 393
Target Start/End: Original strand, 38848500 - 38848616
Alignment:
| Q |
271 |
aaaccactagaagtagttaaaatcctttaaagtttagagttgcaaccaaaaatctttgtactgtttcaatttctaatacatgcataggctatgttgaaca |
370 |
Q |
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||||||| |||| ||||||||| || | |||||||||||||| ||||||||| | || ||||||||||||| || ||||| |||||||||||| |
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| T |
38848500 |
aaaccaccagaaatagttaaaa--ctctgaagtttagagttgcgaccaaaaatgtatgggaagtttcaatttctagta----catagactatgttgaaca |
38848593 |
T |
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| Q |
371 |
aaccttgtaattgtattcttgaa |
393 |
Q |
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|||||| |||||||||||||||| |
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| T |
38848594 |
aaccttttaattgtattcttgaa |
38848616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 525
Target Start/End: Original strand, 38848774 - 38848815
Alignment:
| Q |
484 |
caaaatcaattttattgcttgggagtaatggtttggagattg |
525 |
Q |
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| T |
38848774 |
caaaatcatgtttattgcttgggagtaatggtttggatattg |
38848815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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