View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_30 (Length: 295)
Name: NF18195_high_30
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 1316614 - 1316899
Alignment:
| Q |
1 |
cctaatccagtttttcttcttttattttc---actcgactattccagttatttagacaagtgtttattgcaaaatgattgatcgatctctcaaacagaca |
97 |
Q |
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| T |
1316614 |
cctaatccagtttttcgtcttttcttttcttgacacgactattccagttatttagacaagtgtttattgcaaaatgattgatcgatctctcaaacagaca |
1316713 |
T |
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| Q |
98 |
ggaatatggttttgaatacattgctatatgccaaatccttatcgagtaatttaggaaagtatttattgcaacatgaaagtagttcatggttttgcctaca |
197 |
Q |
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| T |
1316714 |
ggaatatggttttgaatacattgctatatgccaaatcctaatcgagtaatttaggaaagtatttattgcaacatgaaagtagttcatggttttgcctaca |
1316813 |
T |
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| Q |
198 |
tatttcatgagtgatgccattgaagatatatctaaagcatgtggagctttggaaatgaaggaagcagctcctccggttgcaggtat |
283 |
Q |
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| T |
1316814 |
tatttcatgagtgatgccattgaagatatatctaaagcatgtgcagctttggaaatgaaggaagcagctcctccggttgcaggtat |
1316899 |
T |
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Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 203 - 283
Target Start/End: Original strand, 43487057 - 43487137
Alignment:
| Q |
203 |
catgagtgatgccattgaagatatatctaaagcatgtggagctttggaaatgaaggaagcagctcctccggttgcaggtat |
283 |
Q |
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| T |
43487057 |
catgagtgatgccattgaagatatatctaaagcatgtgcagctttggaaatgaaggaagcagctcctccggttgcaggtat |
43487137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 173
Target Start/End: Original strand, 43486869 - 43486938
Alignment:
| Q |
104 |
tggttttgaatacattgctatatgccaaatccttatcgagtaatttaggaaagtatttattgcaacatga |
173 |
Q |
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| T |
43486869 |
tggttttgaatacattgctatatgccaaatcctaatagagtaatttaggaaagtattttgtgcaacatga |
43486938 |
T |
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