View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18195_high_32 (Length: 284)

Name: NF18195_high_32
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18195_high_32
NF18195_high_32
[»] chr2 (2 HSPs)
chr2 (1-270)||(42443917-42444187)
chr2 (147-216)||(10589562-10589631)
[»] chr4 (4 HSPs)
chr4 (27-270)||(2359911-2360155)
chr4 (98-219)||(6020220-6020341)
chr4 (29-219)||(48583607-48583798)
chr4 (98-270)||(7247230-7247393)
[»] chr8 (1 HSPs)
chr8 (17-270)||(36105729-36105968)
[»] scaffold0471 (1 HSPs)
scaffold0471 (17-270)||(3846-4086)
[»] chr7 (2 HSPs)
chr7 (98-270)||(43681994-43682157)
chr7 (98-200)||(12308166-12308258)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 42443917 - 42444187
Alignment:
Q  1 tactatatataaagaaaggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnnaat 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||        |||    
T  42443917 tactatatataaagaaaggaaaatgctgaaatacacgacaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttcctattttttttaat 42444016  T
Q  101 ttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttacct 200  Q
    |||||| ||||||||||||||||||||||| | ||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  42444017 ttggatccaacagaaaatgacaaatcttgcctctgctgtatattttctatgagaaatcatacaaacatctcattcggtggtctatatatatgtcttacct 42444116  T
Q  201 tactattgctttggtaaca-nnnnnnnnaatatatactactgcttttgtatataatttaatattggaagtg 270  Q
    |||||||||||||||||||         || ||||||||||||||||||||||||||||||||||||||||    
T  42444117 tactattgctttggtaacattattttttaacatatactactgcttttgtatataatttaatattggaagtg 42444187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 10589631 - 10589562
Alignment:
Q  147 ttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttggta 216  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| || ||||||||||||    
T  10589631 ttatgagaaatcataaaaacatctcatttgatggtctaaatatgtgtcttacctcaccattgctttggta 10589562  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 270
Target Start/End: Complemental strand, 2360155 - 2359911
Alignment:
Q  27 tgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnnaatttggattcaacagaaaatgacaaatc 126  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||  |||||| ||| |||         ||||||||||||||||||||||||||||     
T  2360155 tgaaatacacgacaatgtttgttgtgtaatttgcacgaacaagtttaaaactaccattaacttttttttttaatttggattcaacagaaaatgacaaatt 2360056  T
Q  127 ttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttggtaaca-nnnnnn 225  Q
    | || ||| ||||| ||||| | |||||||||||| |||||||||||| |||| |||| ||||||||||||| | || |||||||||||| ||           
T  2360055 tggcttgtcctgtaaatttcctttgagaaatcataaaaacatctcattcggtgctctaaatatgtgtcttacttcaccattgctttggtaccattgtttt 2359956  T
Q  226 nnaatatatactactgcttttgtatataatttaatattggaagtg 270  Q
      ||||||||||| |||||||||||||||||||||||||||||||    
T  2359955 ctaatatatactattgcttttgtatataatttaatattggaagtg 2359911  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 6020341 - 6020220
Alignment:
Q  98 aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtctta 197  Q
    ||||| ||||||| |||||||||||||| |||| ||||||||||||||| ||||||||| |||| ||| |||||||| ||||||||||||||||||||||    
T  6020341 aatttagattcaatagaaaatgacaaattttgcttgtgctgtatatttcctatgagaaaacataaaaaaatctcattcggtggtctatatatgtgtctta 6020242  T
Q  198 ccttactattgctttggtaaca 219  Q
    ||| || |||||||||||||||    
T  6020241 cctcaccattgctttggtaaca 6020220  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 48583607 - 48583798
Alignment:
Q  29 aaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnn-aatttggattcaacagaaaatgacaaatct 127  Q
    ||||||||| |||| |||||||||||||||||||||||| |||| ||||||  |||| |||         ||||||||||||| | ||||||| |||| |    
T  48583607 aaatacacgacaatgtttgtcgtgtaatttgcacgaacatgtttgtaactatcatttgctatctttttttaatttggattcaatataaaatgataaattt 48583706  T
Q  128 tgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttggtaaca 219  Q
    ||| ||||||||||||||  |||||||||||||| |||||||| ||||||||||||| | | | ||||||||| || |||||||||||||||    
T  48583707 tgcttgtgctgtatattttctatgagaaatcataaaaacatcttatttggtggtctaaacacgcgtcttacctcaccattgctttggtaaca 48583798  T

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Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 7247393 - 7247230
Alignment:
Q  98 aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtctta 197  Q
    ||||||||||||| |||||||||||||| |||| ||||||||| |||          ||||||| |||||||||||| ||||||||| ||||||||||||    
T  7247393 aatttggattcaatagaaaatgacaaattttgcttgtgctgtaaatt----------aatcataaaaacatctcattcggtggtctaaatatgtgtctta 7247304  T
Q  198 ccttactattgctttggtaacannnnnnnna-atatatactactgcttttgtatataatttaatattggaagtg 270  Q
    ||| |  |||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||    
T  7247303 cctcatcattgctttggtaccattgttttatgatatatactactgcttttgtatataatttaatattggaagtg 7247230  T

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Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 36105968 - 36105729
Alignment:
Q  17 aggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnn-aatttggattcaacagaa 115  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||         ||||| ||||||||||||    
T  36105968 aggaaaatgttgaaatacacgacaatttttgtcgtgtaatttgcacaaacaaatttttaactacgatttattattattttttaatttagattcaacagaa 36105869  T
Q  116 aatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttggt 215  Q
    |||||||||||||                || |||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  36105868 aatgacaaatctt----------------tcctatgagaaattatacaaacatcttattcggtggtctatatatgtgccttaccttactattgctttggt 36105785  T
Q  216 aaca-nnnnnnnnaatatatactactgcttttgtatataatttaatattggaagtg 270  Q
    ||||         ||||||||| ||||||||||||||||||||||||||| |||||    
T  36105784 aacattattttttaatatataccactgcttttgtatataatttaatattgaaagtg 36105729  T

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Target: scaffold0471 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 4086 - 3846
Alignment:
Q  17 aggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnn--aatttggattcaacaga 114  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| ||          ||||| |||||||||||    
T  4086 aggaaaatgttgaaatacacgacaatttttgtcgtgtaatttgcacaaacaaatttttaactacgatttattattatttttttaatttagattcaacaga 3987  T
Q  115 aaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttgg 214  Q
    ||||||||||||||                || |||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||    
T  3986 aaatgacaaatctt----------------tcctatgagaaattatacaaacatcttattcggtggtctatatatgtgccttaccttactattgctttgg 3903  T
Q  215 taaca-nnnnnnnnaatatatactactgcttttgtatataatttaatattggaagtg 270  Q
    |||||         ||||||||| ||||||||||||||||||||||||||| |||||    
T  3902 taacattattttttaatatataccactgcttttgtatataatttaatattgaaagtg 3846  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 43681994 - 43682157
Alignment:
Q  98 aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtctta 197  Q
    ||||||||||||| |||||||||||||| |||| ||||||||| |||          ||||||| |||||||||||| ||||||||| ||||||||||||    
T  43681994 aatttggattcaatagaaaatgacaaattttgcttgtgctgtaaatt----------aatcataaaaacatctcattcggtggtctaaatatgtgtctta 43682083  T
Q  198 ccttactattgctttggtaacannnnnnnna-atatatactactgcttttgtatataatttaatattggaagtg 270  Q
    ||| |  |||||||||||| ||          ||||||||||||||||||||||||||||||||||||||||||    
T  43682084 cctcatcattgctttggtaccattgttttatgatatatactactgcttttgtatataatttaatattggaagtg 43682157  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 12308166 - 12308258
Alignment:
Q  98 aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtctta 197  Q
    ||||||||||||| |||||||||||||| |||| ||||||||| |||          ||||||| |||||||||||| ||||||||| ||||||||||||    
T  12308166 aatttggattcaatagaaaatgacaaattttgcttgtgctgtaaatt----------aatcataaaaacatctcattcggtggtctaaatatgtgtctta 12308255  T

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