View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_4 (Length: 622)
Name: NF18195_high_4
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_4 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 16 - 612
Target Start/End: Complemental strand, 7426172 - 7425576
Alignment:
| Q |
16 |
cacattgctacctatatttccactcttgaagctaaagcttttccccatggtttgccaagattgcaattgttgaaaatttaacgcataattttgaaaacaa |
115 |
Q |
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| T |
7426172 |
cacattgctaccaatatttccactcttgaagctaaagcttttccccatggtttgccaagattgcaattgttaaaaatttaacgcataattttgaaaacaa |
7426073 |
T |
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| Q |
116 |
cttgcaaatgctgctgccatttaagagaatagaataacatcttaatatgccctgagaaagaaaaaatattttctcaattaatgaattatactgttgcaat |
215 |
Q |
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| T |
7426072 |
cttgcaaatgctgctgccatttaagagaatagaataacatcttaatatgccctgagaaagaaaaaatattttctcaattaatgaattatactgttgcaat |
7425973 |
T |
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| Q |
216 |
accaccaatattgctgtcagcgccttgctatatctgcattcaaaatgagatgtccctgctgcactacaacagactcctgcacctgttacagaaaaggcac |
315 |
Q |
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| T |
7425972 |
accaccaatattgctgtcagcgccttgctatatctgcattcaaaatgagatgtccctgctgcactacaacagacgcctgcacctgttacagaaaaggcac |
7425873 |
T |
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| Q |
316 |
tctcaaatgccaaaaattacaaccctgctaaagccatatcctcttgctaccaaattgaagtaatttaataataaccaccttagctcctatactcacagca |
415 |
Q |
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| T |
7425872 |
tctcaaatgccaaaaattataaccctgctaaagccatatcctcttgctaccaaattgaagtaatttaataataaccaccttagctcctatactcacagca |
7425773 |
T |
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| Q |
416 |
ccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacatcccctcttcagcagaccgacagaaacaccacagtcagcaacaacaaga |
515 |
Q |
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| T |
7425772 |
ccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacattccctcttcagcagaccgacagaaacaccacagtcagcaacaacaaga |
7425673 |
T |
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| Q |
516 |
aaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcgtaaataatctgtg |
612 |
Q |
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| T |
7425672 |
aaacaccacagacagacccccacctcagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacacagcataaataatctgtg |
7425576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 58 - 596
Target Start/End: Original strand, 17587 - 18139
Alignment:
| Q |
58 |
ccccatggtttgccaagattgcaattgttgaaaatttaacgcataattttgaaaacaacttgcaaatgctgctgccatttaagagaatagaataacatct |
157 |
Q |
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| T |
17587 |
ccccatagtttcccgagattgcaatagtcgaaaatttaacacataatgatgaaaacaacataaagatgctgctgccatttaagagaatagctgaacaact |
17686 |
T |
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| Q |
158 |
taatatgccctgagaaagaaaaaatattttctcaattaatgaattatactgttgcaataccaccaatattgctgtcagcgccttgctatatctgcattca |
257 |
Q |
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| T |
17687 |
caacctgccctgacaaagaaa---tcttttctcaattaaggaattctactgttaggataccaccaatgttgctgccagcaccttgctatatatgcaatca |
17783 |
T |
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| Q |
258 |
aaatgagatg--------tccctgctgcactacaacagactcctgcacctgttacagaaaaggcactctcaaatgccaaaaattacaaccctgctaaagc |
349 |
Q |
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| T |
17784 |
aactgagatgaaagaaaatccatgttgcactaaataatatgcctgtacctgttacagaaaaaacgccctcaaatgccaaaaatattagaactgctaaagc |
17883 |
T |
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| Q |
350 |
catatcctc------ttgctaccaaattgaagtaatttaataataaccacctt-agctcct--atactcacagcaccacaagactccctctgcttccaaa |
440 |
Q |
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|| | |||| ||||| ||| ||||| | ||| |||||||||||| || |||| || | || |||||| || |||||||||||||||||||| |
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| T |
17884 |
caaagcctcctcttcttgctgtcaacttgaactgattgaataataaccacatttagcttcttaaaacaaacagcatcataagactccctctgcttccaac |
17983 |
T |
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| Q |
441 |
caaaagctcgagacattaagagaacatcccctcttcagcagaccgacagaaacaccacagtcagcaacaacaagaaaacaccacagacagacccccacct |
540 |
Q |
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||||||| | |||| || ||||| |||||||| ||| | ||||| |||||||||||| ||||| || ||||||| ||||| ||||| |||||| ||| |
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| T |
17984 |
caaaagcaccagaccctatgagaatgtcccctctacagacggccgaccgaaacaccacagccagcagcagcaagaaagcaccatagacacaccccctcct |
18083 |
T |
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| Q |
541 |
cagactatgaatcaacaatttgtcaatctgccacgacttcggatatttcagacaca |
596 |
Q |
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| T |
18084 |
cagactatgaatcaaaaaactgccaaactgccgcaacttcggatatttcagacaca |
18139 |
T |
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