View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_40 (Length: 236)
Name: NF18195_high_40
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 15454344 - 15454438
Alignment:
| Q |
3 |
gatccctttaattaaagctaatttggaaactgttcaatatgttctttaatgaagctttaattaatttagtaaaattataatcaatggatagtgct |
97 |
Q |
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| T |
15454344 |
gatccctttaattaaagctaatttggaaactgttcaatatgttctttaatgaagctttaattaatttagtaaaattataatcaatggatagtgct |
15454438 |
T |
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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 15454494 - 15454562
Alignment:
| Q |
154 |
caattcattttaaaattgaagttatgtttggctgtttgcattgaagaaaggaaaaacaaaagcagatta |
222 |
Q |
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| T |
15454494 |
caattcattttaaaattgaagttatgtttggctgtttgcattgaagaaaggaaaaacaaaagcagatta |
15454562 |
T |
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