View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_46 (Length: 206)
Name: NF18195_high_46
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_46 |
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| [»] chr6 (7 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 6505022 - 6504835
Alignment:
| Q |
19 |
gagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctga |
118 |
Q |
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| T |
6505022 |
gagatagtggactttggtttgctccacctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctga |
6504923 |
T |
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| Q |
119 |
tgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattctta |
206 |
Q |
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| T |
6504922 |
tgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaagggattctta |
6504835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 6473679 - 6473853
Alignment:
| Q |
19 |
gagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctga |
118 |
Q |
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| T |
6473679 |
gagacagtggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctgaagttttgttttcaga |
6473778 |
T |
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| Q |
119 |
tgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaa |
196 |
Q |
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| T |
6473779 |
tgttgattatgtgaaggaacttgtggagtggacattgcttgctttaaatagggaa---ggtgttgaagaaggatggaa |
6473853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 196
Target Start/End: Original strand, 6462457 - 6462631
Alignment:
| Q |
19 |
gagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctga |
118 |
Q |
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|||| ||||||||||||||||||||| |||||| |||||| ||| ||||||||||| ||||||||| |||||||||||||| ||||| ||||| |
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| T |
6462457 |
gagaaagtggactttggtttgctccacctgaatatagagaatgtagacttggaattcagctcttaccattggttcctatttctgaagtattgttctctga |
6462556 |
T |
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| Q |
119 |
tgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaa |
196 |
Q |
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| T |
6462557 |
tgttgaatatgtgaagcaacttgttgaatggacattgcctgctttgaaaag---agatggtgttgaagaaggatggaa |
6462631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 6464875 - 6464701
Alignment:
| Q |
19 |
gagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctga |
118 |
Q |
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| T |
6464875 |
gagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaattcttattttcaaa |
6464776 |
T |
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| Q |
119 |
tgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaa |
196 |
Q |
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| T |
6464775 |
tgttgattttgtgaaggaacttgtggagtggacattgcctgctttgaatagggaa---ggtgttggagaaggatggaa |
6464701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 6516812 - 6516893
Alignment:
| Q |
82 |
taccattggctcctatttctgaagatttgttttctgatgttgattatgttaaagatcttgttgagtggacattgcctgcttt |
163 |
Q |
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| T |
6516812 |
taccattgtgtccaatttctgaagttttattttctgatgttgattatgtgaaagaacttgttgagtgggcattgcctccttt |
6516893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 6496215 - 6496041
Alignment:
| Q |
19 |
gagatagtggactttggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctga |
118 |
Q |
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|||| ||||||||||||||||||||| | |||| | |||| |||| ||| ||||||| |||||||| |||||||||||||| ||||| ||||| |
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| T |
6496215 |
gagaaagtggactttggtttgctccaccggaatataaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaagtattgttctctga |
6496116 |
T |
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| Q |
119 |
tgttgattatgttaaagatcttgttgagtggacattgcctgctttgaatagggaaggtggtgttggagaaggatggaa |
196 |
Q |
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| T |
6496115 |
tgtcgaatatgtgaagcaacttgttgaatgggcattgcctgctttgaaaag---agatggtgttgaagaaggatggaa |
6496041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 177
Target Start/End: Complemental strand, 6525899 - 6525755
Alignment:
| Q |
33 |
tggtttgctccagctgaatggagagaagctaggacaggaattcagcttataccattggctcctatttctgaagatttgttttctgatgttgattatgtta |
132 |
Q |
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||||||| |||||||||||||| |||| |||| || |||||||| |||||||| ||| |||||||||| ||||| ||||||||| ||||| | |
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| T |
6525899 |
tggtttggtccagctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaagtcttgttctctgatgttatgtatgtga |
6525800 |
T |
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| Q |
133 |
aagatcttgttgagtggacattgcctgctttgaatagggaaggtg |
177 |
Q |
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| T |
6525799 |
agggacttgtggagtggacattacctgctttaaaaagggatggtg |
6525755 |
T |
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