View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_6 (Length: 560)
Name: NF18195_high_6
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 35744512 - 35744757
Alignment:
| Q |
1 |
tctttcttttgttcatcttcttctatgtcaaatctctcacttgctaacttcatcaaataatctagagtcaccagcaaagtttcacctgcacaacaaatca |
100 |
Q |
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| T |
35744512 |
tctttcttttgttcatcttcttctatgtcaaatctctcacttgctaacttcatcaaataatctagagtcaccagcaaagtttcacctgcacaacaaatca |
35744611 |
T |
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| Q |
101 |
aattgcttgaaaactgacaaactagtattttaacccatgcaacgcaggaggagataattattgcatttttaacgagtatgcacttttatgcaggcctcga |
200 |
Q |
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| T |
35744612 |
aattgcttgaaaactgacaaactagtattttaaccaatgcaacgcaggaggagataattattgcatttttaacgagtatgcacttttatgcaggcctcga |
35744711 |
T |
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| Q |
201 |
atccaatcacattttacattgatgtcacttttgttatatcactttc |
246 |
Q |
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| T |
35744712 |
atccaatcacattttacattgatgtcacttttgttatatcactttc |
35744757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 290 - 549
Target Start/End: Original strand, 35744796 - 35745051
Alignment:
| Q |
290 |
aagaagtttttacattgttgatgcatatctaagatcattagtaacatacccaattgacgcatgttgttgtcatccttgcatgttggaaatgcaatatcaa |
389 |
Q |
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||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744796 |
aagaagtttttacattgttgatgcata----agatcattaataacatacccaattgacgcatgttgttgtcatccttgcatgttggaaatgcaatatcaa |
35744891 |
T |
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| Q |
390 |
gcttatccatgcaatcattgtccatcatccatgactctccaagagacttcaaagcctcacagaagtaggccacagcctagtataaaataaatgtccacat |
489 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35744892 |
gcttatccatgcaatcattgtccatcatccatgactctccaagagacttcaaagcctcacagaagtaggccacagcctagtataaaataaatgtccacat |
35744991 |
T |
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| Q |
490 |
ttagattttcaggatgctaagatttcagtaattatcataattagaataatttcatttcag |
549 |
Q |
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| T |
35744992 |
ttagattttcaggatgctaagatttcagtaattatcataattagaataatttcatttcag |
35745051 |
T |
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