View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18195_high_8 (Length: 546)
Name: NF18195_high_8
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 19 - 536
Target Start/End: Complemental strand, 33632259 - 33631742
Alignment:
| Q |
19 |
tgtagaccttctgaggaactgagttttatgactccggctgacacttacattccacaaataccaatatgtatgaataatgaaggcgtgcaaccttcagggt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632259 |
tgtagaccttctgaggaactgagttttatgactccggctgacacttacattccacaaataccaatatgtatgaataatgaaggcgtgcaaccttcagggt |
33632160 |
T |
|
| Q |
119 |
taggaagccaaaacaaggaaacagctcctgttcacaactttgaaagcatccttccagccttgccacccagttttgcgtcattcctgatggattactctgg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632159 |
taggaagccaaaacaaggaaacagctcctgttcacaactttgaaagcatccttccagccttgccacccagttttgcgtcattcctgatggattactctgg |
33632060 |
T |
|
| Q |
219 |
tctcaatcctggttggcgaacttttttgctttaaactatttgttctgatttctaccacatcatatttcatctgaatacaataatatcttgcagctcaacc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33632059 |
tctcaatcctggttggcgaacttttttgctttaaactatttgttctgatttctaccacatcatatttcatctgaatacaataatatcttgcagctcaacc |
33631960 |
T |
|
| Q |
319 |
aactgttacagaggagaatgatctcaagtcccaaatagcggtacaaattttggatttcacattttgattagatgttatgttactatctgatgctttaatc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33631959 |
aactgttacagaggagaatgatctcaagtcccaaatagcggtacaaattttggatttcgcattttgattagatgttatgttacaatctgatgctttaatc |
33631860 |
T |
|
| Q |
419 |
accacataacattgatatgatgctcatcatgatatataagctttctctaagttgtgaatatttgagaagtacatcttattaactgattatttgttactcc |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33631859 |
accacataacattgatatgatgctcatcatgatatataagctttctctaagttgtgaatatttgagaagtacatcttattaactgattatttgttactcc |
33631760 |
T |
|
| Q |
519 |
tgatattcttttcctttg |
536 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
33631759 |
tgatattcttttcctttg |
33631742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 20 - 536
Target Start/End: Original strand, 29193732 - 29194248
Alignment:
| Q |
20 |
gtagaccttctgaggaactgagttttatgactccggctgacacttacattccacaaataccaatatgtatgaataatgaaggcgtgcaaccttcagggtt |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
29193732 |
gtagaccttctcaggaactgagttttatgactcctgctgacacttacattccacaaatgccaatatgtatgacaaatgaaggagtgcaaccttcagggtt |
29193831 |
T |
|
| Q |
120 |
aggaagccaaaacaaggaaacagctcctgttcacaactttgaaagcatccttccagccttgccacccagttttgcgtcattcctgatggattactctggt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
29193832 |
aggaagccaaaacaaggaaacagctcctgttcacaactttgaaaacatccttccagctttgccacccagttttgcctcattcctgatggattgctctggt |
29193931 |
T |
|
| Q |
220 |
ctcaatcctggttggcgaacttttttgctttaaactatttgttctgatttctaccacatcatatttcatctgaatacaataatatcttgcagctcaacca |
319 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29193932 |
ctcaatcatggttggtgaacttttttgctttaaactatttgttctggtttctatcacatcatatttcatctgaatacaataatatattgcagctcaacca |
29194031 |
T |
|
| Q |
320 |
actgttacagaggagaatgatctcaagtcccaaatagcggtacaaattttggatttcacattttgattagatgttatgttactatctgatgctttaatca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
29194032 |
actgttacagaggagaatgatctcaagtcccaaatagcggtacatattttggttttcacattttgcttagatgttatgttactatctgatgctttgatca |
29194131 |
T |
|
| Q |
420 |
ccacataacattgatatgatgctcatcatgatatataagctttctctaagttgtgaatatttgagaagtacatcttattaactgattatttgttactcct |
519 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
29194132 |
ccacatgtcattgatatgatgctcattgtgatatataagctttctctaagttatgaatatttgagaagtacatcttcttaactgattatttgttacttct |
29194231 |
T |
|
| Q |
520 |
gatattcttttcctttg |
536 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29194232 |
gatattcttttcctttg |
29194248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 378 - 536
Target Start/End: Original strand, 26658944 - 26659099
Alignment:
| Q |
378 |
cattttgattagatgttatgttactatctgatgctttaatcaccacataacattgatatgatgctcatcatgatatataagctttctctaagttgtgaat |
477 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
26658944 |
cattttgcttacatgttatgttactatctgaggctttgatcaccacatgacattgatatgatgctcattatgatatacaagctttctctaagttatgaat |
26659043 |
T |
|
| Q |
478 |
atttgagaagtacatcttattaactgattatttgttactcctgatattcttttcctttg |
536 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||| |||||||||||||||||| |
|
|
| T |
26659044 |
atttgagaagtacatc---ttaattgattatttgttgctcttgatattcttttcctttg |
26659099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 29193689 - 29193728
Alignment:
| Q |
19 |
tgtagaccttctgaggaactgagttttatgactccggctg |
58 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
29193689 |
tgtagaccttctgaggaactgagctttatgattccggctg |
29193728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University