View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_high_9 (Length: 471)
Name: NF18195_high_9
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_high_9 |
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| [»] scaffold1583 (1 HSPs) |
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Alignment Details
Target: scaffold1583 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 465
Target Start/End: Original strand, 688 - 1142
Alignment:
| Q |
11 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
110 |
Q |
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|||| ||||| |||||||| ||||||||||||| ||||||||||||| ||||||| ||||||||||||| ||||||||||||||| || ||||||||||| |
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| T |
688 |
catcgccaccgccttcaccatggtcaccttctcctcctccaccaccttctccaccagacctaaacaaaacaccaccatctccaaactcgccaccactctc |
787 |
T |
|
| Q |
111 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
210 |
Q |
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| T |
788 |
accgccgccatcagattcatctctgtctcctcttctaactcaacaccaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
887 |
T |
|
| Q |
211 |
atttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatctt |
310 |
Q |
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||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||| |
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| T |
888 |
attagtaaacccttgtttcaagcttctccaccaatcatcactcaaaccgctcctcatctcaaaaatttctctcaatcaaaaccaaagaagacaaaatctt |
987 |
T |
|
| Q |
311 |
ctcaattgattggtgttcgaagatcaaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattc |
410 |
Q |
| |
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|||||| ||||||||||| |||||||| || |||||||||||||| ||||| |||||||||||||||| ||||||||| ||| |||||||| |||| |
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| T |
988 |
ctcaatcaattggtgttcgtagatcaaacagaattagggctggaataggaatgagaaaaactcaaagtgtagatactacagtacatgaaattcctgattc |
1087 |
T |
|
| Q |
411 |
tgaagatgaagcaaaccacagagatgctgctccaaaataaccttctgatgatgtc |
465 |
Q |
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| T |
1088 |
tgaagatgaaacaaaccacagagaagctgttccaacagaatcttctgttgatgtc |
1142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 465
Target Start/End: Original strand, 12921650 - 12922110
Alignment:
| Q |
16 |
ccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctcaccgc |
115 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| | |||| ||||||||||||||||| | |
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| T |
12921650 |
ccaccgccttcaccgtggtcaccttctcctcctccaccaccttctccacctgacctaaacaaaacaccaccattttcaaactctccaccactctcaccac |
12921749 |
T |
|
| Q |
116 |
cgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatgatttc |
215 |
Q |
| |
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| T |
12921750 |
cgccatcagagacatctctgtctcctcttctaactcaacaacaaccaaactctccagaagatgaaccaccattaaacatcatgcctctagacatgattaa |
12921849 |
T |
|
| Q |
216 |
taaacccttgtttcaagcttctcca-----------ccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaa |
304 |
Q |
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| T |
12921850 |
taaacccttgtttcaagcttctctaaataatttggccgaatcatcactcaaaccgctcctcatctcaaaaccttctctcaatcgaaaccaaataagacaa |
12921949 |
T |
|
| Q |
305 |
aatcttctcaattgattggtgttcgaagatcaaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcc |
404 |
Q |
| |
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|||||||||||| |||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||| | ||||||| ||| ||||||| |
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| T |
12921950 |
aatcttctcaatcgattggtgttcgtagatcaaacaggattagggctggaataggaatcagaaaaactcaaagtgtagacactacagtacatgaaattcc |
12922049 |
T |
|
| Q |
405 |
taattctgaagatgaagcaaaccacagagatgctgctccaaaataaccttctgatgatgtc |
465 |
Q |
| |
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| T |
12922050 |
tgattctgaagatgaagcaaaccacagagaagctgttccaacagaaccttctgttgatgtc |
12922110 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 14275999 - 14275545
Alignment:
| Q |
11 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
110 |
Q |
| |
|
|||| ||||| |||||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||||||||||| |
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| T |
14275999 |
catcgccaccgccttcaccatggtcactgtctcctcctccaccaccttctccacctgacctaaacaaaacaccgccatctccaaactctccaccactctc |
14275900 |
T |
|
| Q |
111 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
210 |
Q |
| |
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| T |
14275899 |
accgccgccatcagattcatctctgtctcctcttctaactcaacaccaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
14275800 |
T |
|
| Q |
211 |
atttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatctt |
310 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |
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| T |
14275799 |
attagtaaacccttgtttcaagcttctccaccaatcatcactcaaaccgctcctcatctcaaaaatttctctcaatcgaaaccaaagaagacaaaatctt |
14275700 |
T |
|
| Q |
311 |
ctcaattgattggtgttcgaagatcaaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattc |
410 |
Q |
| |
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|||||| ||||||||||| |||||||| || ||||| |||| ||| ||| | ||||||||||| |||| ||||||||| ||| |||||| | |||| |
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| T |
14275699 |
ctcaatcaattggtgttcgtagatcaaacagaattagagctgaaataggattgagaaaaactcaatgtgtagatactacagtacatgaaattcatgattc |
14275600 |
T |
|
| Q |
411 |
tgaagatgaagcaaaccacagagatgctgctccaaaataaccttctgatgatgtc |
465 |
Q |
| |
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|||||||||| | ||||||||||| | || ||||| | ||||||||| ||||||| |
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|
| T |
14275599 |
tgaagatgaaaccaaccacagagaagttgttccaacagaaccttctgttgatgtc |
14275545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 466
Target Start/End: Complemental strand, 14638721 - 14638266
Alignment:
| Q |
11 |
catcaccaccaccttcaccgtggtcaccttctcgtcctccaccacctactccacctgacctaaacaaaagaccaccatctccaaaatctccaccactctc |
110 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||| ||||||||||||| ||||||| ||||| ||||||| ||||||||||||||| || ||||||||||| |
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|
| T |
14638721 |
catcgccaccaccttcaccacggtcacattctcctcctccaccaccttctccaccagacctgaacaaaacaccaccatctccaaactcgccaccactctc |
14638622 |
T |
|
| Q |
111 |
accgccgccattaaagacatctctgtatcctcttctaactcaacaacaaccaaacacttcagaagatgaaccaccactaaacatcatgcctctagacatg |
210 |
Q |
| |
|
|||||| |||| | | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14638621 |
accgccaccatcagattcatctctgtctcctcttctaactcaacaacaaccaaacactccagaagatgaaccaccactaaacatcatgcctctagacatg |
14638522 |
T |
|
| Q |
211 |
atttctaaacccttgtttcaagcttctccaccagtcatcactcaaaccgctcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatctt |
310 |
Q |
| |
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||| ||||||||||||||||||||||||| || | ||||||||||||||||||||||| || || | ||||||| |||||| |||||||||||||||| |
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|
| T |
14638521 |
attagtaaacccttgtttcaagcttctccatcaataatcactcaaaccgctcctcatctaaaagctctttctcaatcgaaacccaagaagacaaaatctt |
14638422 |
T |
|
| Q |
311 |
ctcaattgattggtgttcgaagatcaaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattc |
410 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||||||||||||||||| ||||| | |||||||||||||| ||||||||| ||| |||||||| |||| |
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| T |
14638421 |
ctcaatcgattggtattcgtagatcaaacaggattagggctggaataggaataaggaaaactcaaagtgtagatactacagtacatgaaattcctgattc |
14638322 |
T |
|
| Q |
411 |
tgaagatgaagcaaaccacagagatgctgctccaaaataaccttctgatgatgtcc |
466 |
Q |
| |
|
|||||||||| | | ||||||||| |||| ||||| | ||||||||| |||||||| |
|
|
| T |
14638321 |
tgaagatgaaactacccacagagaagctgttccaacagaaccttctgttgatgtcc |
14638266 |
T |
|
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