View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_1 (Length: 1211)
Name: NF18195_low_1
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 733; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 1 - 816
Target Start/End: Complemental strand, 8446986 - 8446166
Alignment:
| Q |
1 |
gaagatcaaacaagacgaaggagcaattcgacagagtaaagaaaagctcaagaaagtgcttgatgtgtacgataagaggcttggggaaactcgctacttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8446986 |
gaagatcaaacaagacgaaggagcaattcgacagagtaaagaaaagctcaagaaagtgcttgatgtgtacgataagaggcttggggaaactcgctacttg |
8446887 |
T |
|
| Q |
101 |
gctggtgatgagttcacacttgccgacctttcacatcttcccaatattcactacttggtggctgctgctgatgccgacaccgctgatttgtttacttctt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8446886 |
gctggtgatgaattcacacttgccgacctttcacatcttcccaatattcactacttggtggctgctgctgatgccgacaccgctgatttgtttacttctt |
8446787 |
T |
|
| Q |
201 |
cgtcaagaaacaatgtgtcaaggtggtggacggaaatatccacacgtgagtcgtggaaaaaggtcatcgatttgtacccaaaaccttgattcattaatca |
300 |
Q |
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| T |
8446786 |
cgtcaagaaacaatgtgtcaaggtggtggacggaaatatccacacgtgagtcgtggaaaaaggtcatcgatttgtacccaaaaccttgattcattaatca |
8446687 |
T |
|
| Q |
301 |
cattcacacatttggaacattggtagctctttgatattctagaccaaacagtccagccatgtccctaatgcttgaatgcgagattttttcagaccggagc |
400 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8446686 |
cattcacacatttggaacattggtagctctttgatattctagaccaaacagtccaaccatgtccctaatgcttgaatgcgagattttttcagaccggagc |
8446587 |
T |
|
| Q |
401 |
aagtcccatttccttttacccccgcactcatagacgttagatcagcagattaataacgaccagtactatgctttctatgcattttataatatttttcact |
500 |
Q |
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| T |
8446586 |
aagtcccatttccttttacccccgcactcatagacgttagatcagcagattaataacgaccagtactatgctttctatgcattttataatatttttcaat |
8446487 |
T |
|
| Q |
501 |
ttctatcgtgattgttgacatggctccttttctttatttgtatgatgaacattttgattcgagtgatctaggatgctaaattgttaagctttgattctaa |
600 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8446486 |
ttctatcgtgattgttgacatggctccttttctttatttgtatgatgaacattttgattcgagtgatttaggatgctaaattgttaagctttgattctaa |
8446387 |
T |
|
| Q |
601 |
attttgattatcttgaaaaatgtcacttggcctctagtgatctaggaagctaaattatggcacactagctattcctttggcataaaaactaatataatat |
700 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8446386 |
attttgattatcttgaaaaatgtca-----cctccagtgatctaggaagctaaattatggcacactagctattcctttggcataaaaactaatataatct |
8446292 |
T |
|
| Q |
701 |
aatctaaagtggatttctaggggtacgaacataagagactaaagtatctaatttttgtaaattacaggg-----------tatgctctattgttctaatc |
789 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
8446291 |
aatctaaagtggatttctaggggtacgaacataagagactaaagtatctaatttttgtaaattacagggatcttcacctctattctctattgttctaatc |
8446192 |
T |
|
| Q |
790 |
tttgtccctaactctttccctttgtaa |
816 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
8446191 |
-ttgtccctaactctttccctttgtaa |
8446166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 774 - 1039
Target Start/End: Complemental strand, 8446141 - 8445876
Alignment:
| Q |
774 |
ctctattgttctaatctttgtccctaactctttccctttgtaatccctcaactgttttcttccccgtctccctttgatcttgtttctattgtggatt-gg |
872 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
8446141 |
ctctattgttctaatctttgtccctaactctttccctttgtaatccctcaactgttttcttccccgtctccctttgatcttgtttctattgtggatttgg |
8446042 |
T |
|
| Q |
873 |
aatactctgtctcccaaaagcgacatcgcccctgcccatgccttattcaaacttgggaccatagcatacactagtggagttccagggttttcattcaaga |
972 |
Q |
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| T |
8446041 |
aatactctgtctcccaaaagcgacatcacccctgcccatgctttattcaaacttgggaccatagcatacactagtggagttccagggttttcattcaaga |
8445942 |
T |
|
| Q |
973 |
ttatgatagcaacaagtataaattagtaacaaaatcacttaacttggataataataattagaaggcc |
1039 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8445941 |
ttatgatagcaacaagtataaattagtaac-aaatcacttaacttggataataataattagaaggcc |
8445876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 1141 - 1201
Target Start/End: Complemental strand, 8445874 - 8445814
Alignment:
| Q |
1141 |
ttgtgtgtgctttagtaggcttagagcgccaaatattatagggaggttcagtctgtgctgc |
1201 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8445874 |
ttgtgtgtgctttggtaggcttagagcgccaaatattatagggaggttcagtctgtgctgc |
8445814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1023 - 1066
Target Start/End: Complemental strand, 43062010 - 43061967
Alignment:
| Q |
1023 |
ataataattagaaggccaaacacaaaacaataccaaaatctaaa |
1066 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
43062010 |
ataataattagaagaccaaccacaaaacaataccaaaatctaaa |
43061967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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