View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_17 (Length: 441)
Name: NF18195_low_17
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 49 - 432
Target Start/End: Original strand, 24559868 - 24560248
Alignment:
| Q |
49 |
gtagtgttataatgtaacgaggcaaaatgaaaagnnnnnnnnnnnnnngaggaagagaagaaattaagtttcaagcttatctcttagggagagaaattct |
148 |
Q |
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| T |
24559868 |
gtagtgttataatgtaacgaggcaaaatgaaaagaaaaaaaa------gagggagagaagaaattaagttctaaacttatttctcagagagagaaattct |
24559961 |
T |
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| Q |
149 |
atactaggcggaaggcagaattaactcaaaatgtaattttgtttaacacaaacaattgt--taatctatgaat----aataatgaaaacatataatataa |
242 |
Q |
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| T |
24559962 |
atgctaggcgaaagacagaaataactcaaaatgtaattttgtttaacacaaacaattgtgttaatctattaattaataataatgaaaacatataata--- |
24560058 |
T |
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| Q |
243 |
tagttcatataaactgtcacactagcatacttaagaggnnnnnnn-gacattggataattaattttaattctagtgtatcctttt-ctatattcactttg |
340 |
Q |
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| T |
24560059 |
--gttcatataaactgtcacactagcatacttaagaggaaaaaaaagacattggataatcaattttaattctagtatatcctttttctatattcactttg |
24560156 |
T |
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| Q |
341 |
tagctttttgtccttatatatactcttgccatccaactatcctccctaacaaacattctaactctacctcttcaaacctatctcccctttgc |
432 |
Q |
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| T |
24560157 |
tagctttttgtccttatatatactcttgccatccaactatcctccctaacaaacattccaactctacctcttcaaacctatctcccctttgc |
24560248 |
T |
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