View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_2 (Length: 1076)
Name: NF18195_low_2
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_2 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 553 - 1076
Target Start/End: Original strand, 45200556 - 45201079
Alignment:
| Q |
553 |
ccaatacctcatcacattcaaaaccttagtatacatgaatattgcatagtttattattcacaacacatagcaaaataattcaaactccaacatggaagtt |
652 |
Q |
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| T |
45200556 |
ccaatacctcatcacattcaaaaccttagtatacatgaatattgcatagtttattattcacaacacatagcaaaataattcaaactccaacatggaagtt |
45200655 |
T |
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| Q |
653 |
tcatgcaagattctaagaagatcaattcatagttttctccaaaactatcattatttcacttcatcaatagcttttcttgtttttcctttctcggcttcga |
752 |
Q |
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| T |
45200656 |
tcatgcaagattctaagaagatcaattcatagttttctccaaaactatcattatttcacttcatcaatagcttttcttgtttttcctttctcggcttcga |
45200755 |
T |
|
| Q |
753 |
tacttatctcacaagcttttgttccttctccttcatcccttttgcctcaaatttataaccgtttaaggactctttttgatgctgcaggatttccttccta |
852 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45200756 |
tacttatctcacaagcttttgttccttctccttcatcccttttgcctcaaatttataaccgtttaaggactctttttgatgctgcaggatttccttccta |
45200855 |
T |
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| Q |
853 |
ttctctattgttcaacattcttaacctcaaggtttctcaaacaatcacttgttcaatcttttcacttcctttcacactaactgtccttctgattgcaaaa |
952 |
Q |
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| T |
45200856 |
ttctctattgttcaacattcttaacctcaaggtttctcaaacaatcacttgttcaatcttttcacttcctttcacactaactgtccttctgattgcaaaa |
45200955 |
T |
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| Q |
953 |
gcatccataattcatgcacttaaactcaatcacaataaaccatctttgccgccttcattctcttcgataatagcactttacaagccactctttcatacct |
1052 |
Q |
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| T |
45200956 |
gcatccataattcatgcacttaaactcaatcacaataaaccatctttgccgccttcattctcttcgataatagcactttacaagccactctttcatacct |
45201055 |
T |
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| Q |
1053 |
atatctgcaactgtttcttaatta |
1076 |
Q |
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| T |
45201056 |
atatctgcaactgtttcttaatta |
45201079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Original strand, 45200022 - 45200505
Alignment:
| Q |
19 |
tagtgttcctttttattttacactcatgtcataaaacaaaatgacgctttaatttgaagaataatgggaccaatatgaatgctcaattagcccattttgt |
118 |
Q |
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| T |
45200022 |
tagtgttcctttttattttacactcatgtcataaaacaaaatgacgctttaatttgaagaataatgggaccaatatgaatgctccattagcccattttgt |
45200121 |
T |
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| Q |
119 |
cataatttacaatatagtatttatagaaaattgaaaaaagtgttgtagccatcatcaattataagctacaaaataatgtataatctaagcaatnnnnnnn |
218 |
Q |
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| T |
45200122 |
cataatttacaatatagtatttatagaaaattgaaaaaagtgttgtagccatcatcaattataagctacaaaataatgtataatctaagcaataaaaaaa |
45200221 |
T |
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| Q |
219 |
gagaaagagacccctcatcatgaagacaaaacttaaggacctgtcatataccaaattgtgaaaccatctatgcttttcaatttttgccttctaactaaac |
318 |
Q |
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| T |
45200222 |
gagaaagagacccctcatcatgaagacaaaacttaaggatctgtcatataccaaattgtgaaaccatctatgcttttcaatttttgccttctaaccaaac |
45200321 |
T |
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| Q |
319 |
cagctaatatgcttgtggttcgtaaaacacaaagagattatcattatacacacaatgtgtccaaaaactaaggtaaaaacaaagtccaaacaacttcacc |
418 |
Q |
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| T |
45200322 |
cagctaatatgcttgtggttcgtagaacacaaagagattatcattatacgcacaatgtgtccaaaaactaaggtaaaaacaaagtccaaacaacttcacc |
45200421 |
T |
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| Q |
419 |
ttatacaaagtcgttagtttcttcttgttggcctatctattcatccaaaacaccaactcttaatctctccaactaaccttttcc |
502 |
Q |
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| T |
45200422 |
ttatacaaagtcgttagtttcttcttgttggcctatctattcatccaaaacaccaactcttaatctctccaactaaccttttcc |
45200505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 3e-85; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 3e-85
Query Start/End: Original strand, 803 - 1066
Target Start/End: Complemental strand, 7773293 - 7773035
Alignment:
| Q |
803 |
atttataaccgtttaaggactctttttgatgctgcaggatttccttcctattctctattgttcaacattcttaacctcaaggtttctcaaacaatcactt |
902 |
Q |
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|||||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| |||| ||||||||||| ||| |||||||||||||| |
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| T |
7773293 |
atttataatcgtttaaggactctctttgatgctgcaggatatccttcctattctatattgttca-catttttaacctcaagtttt-tcaaacaatcactt |
7773196 |
T |
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| Q |
903 |
gttcaatcttttcacttcctttcacactaactgtccttctgattgcaaaagcatccataattcatgcacttaaactcaatcacaataaaccatctttgcc |
1002 |
Q |
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| T |
7773195 |
gttcaatcttttcacttcctttcacactcaatgtc-ttc--attgcaaaagcatccataattcaagcttttaaactaaatcacaataaaccatctttgtc |
7773099 |
T |
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| Q |
1003 |
gccttcattctcttcgataatagcactttacaagccactctttcatacctatatctgcaactgt |
1066 |
Q |
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| T |
7773098 |
accttcattctctttgataaaagcactttacaagccactctttcatacctatatctgcatctgt |
7773035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 644 - 966
Target Start/End: Complemental strand, 13581176 - 13580854
Alignment:
| Q |
644 |
atggaagtttcatgcaagattctaagaagatcaattcatagttttctccaaaactatcattatttcacttcatcaatagcttttcttgtttttcctttct |
743 |
Q |
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|||||||| |||| ||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||| | ||||| | |||| | |||||||||| |
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| T |
13581176 |
atggaagtctcatacaaaattcttagaagatcaattcatagttttcttcaaaactatcaatatttcaccataacaatatcaattctagcatttcctttct |
13581077 |
T |
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| Q |
744 |
cggcttcgatacttatctcacaagcttttgttccttctccttcatcccttttgcctcaaatttataaccgtttaaggactctttttgatgctgcaggatt |
843 |
Q |
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| T |
13581076 |
cagcatcaatactcctttcacaagcattagtccctttttcttcatcccttttccctcaaatatacaatcacctaaaaactctctttgatgctgcaggctt |
13580977 |
T |
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| Q |
844 |
tccttcctattctctattgttcaacattcttaacctcaaggtttctcaaacaatcacttgttcaatcttttcacttcctttcacactaactgtccttctg |
943 |
Q |
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| T |
13580976 |
tccttcttcatcacaattgtttactgttcttaaccttaaagtttctcaaacaatcacttcctcaatcttcacacttcctttcactctcacttttttcctc |
13580877 |
T |
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| Q |
944 |
attgcaaaagcatccataattca |
966 |
Q |
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| T |
13580876 |
attgcaaaagctttcataattca |
13580854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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