View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_22 (Length: 386)
Name: NF18195_low_22
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 370
Target Start/End: Original strand, 48740586 - 48740942
Alignment:
| Q |
15 |
ggtggacataacatgtaacatgatgccaaaaactaaagatattcccattttaatctcnnnnnnn-ctcaatatgtttgctatacgaaggaaactaattgc |
113 |
Q |
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| T |
48740586 |
ggtggacataacatgtaacatgatgccaaaaactaaagatattccccttttaatctctttattttctcaatatgtttgctatacgaaggaaactaatcgc |
48740685 |
T |
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| Q |
114 |
tcaaggtagatataatatggaatcagctgcgtcacaagcagcaaatagagaatatgccccatctaaaatcaaaagatttaggctatgtatatttatattt |
213 |
Q |
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| T |
48740686 |
tcaaggtagatataatatggaatcagctgcgtcacaagcagcaaatagagaatatgccccatctaaaatcaaaagatttaggctatgtatatttatattt |
48740785 |
T |
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| Q |
214 |
ttagctaaaggtttaaaaaataaatatttgtctaaaacaatacctgatgtcaacatgctgaaaagactcaactaagaaagattatgttctttgtagataa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48740786 |
ttagctaaaggtttaaaaaataaatatttgtctaaaacaatacctgatgtcaacatgctgaaaagactcaactaagaaagattatgttctttgtagataa |
48740885 |
T |
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| Q |
314 |
gaagnnnnnnnttgttaacggtacgtaaatcacagccagaaagaatttactcgatat |
370 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48740886 |
gaagaaaaaaattgttaacggcacgtaaatcacagccagaaagaatttactcgatat |
48740942 |
T |
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