View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_27 (Length: 358)
Name: NF18195_low_27
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_27 |
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| [»] scaffold0386 (2 HSPs) |
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Alignment Details
Target: scaffold0386 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: scaffold0386
Description:
Target: scaffold0386; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 165 - 302
Target Start/End: Original strand, 2238 - 2375
Alignment:
| Q |
165 |
tataagagcattattctctagttcaattgtaagatatataatctttacttgttaaggagatcatcctataatatattgtgagcataaagcattggtttgt |
264 |
Q |
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| T |
2238 |
tataagagcattattctctagttcaattgtaagatatataatctttacttgttaaggagatcatcctataatatattgtgagcataaagcattggtttgt |
2337 |
T |
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| Q |
265 |
taacagaattaatagaggaccatttttctgcaattact |
302 |
Q |
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| T |
2338 |
taccaaaattaatacaggaccatttttgtgcaattact |
2375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0386; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 2101 - 2170
Alignment:
| Q |
7 |
tgaaatgaaactgaatttactcaattgaacttgtagtgaacttggtaaactcaggaaaattcgcaataat |
76 |
Q |
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| T |
2101 |
tgaaatgaaactgaatttactcaattgaacttgtagtgaacttggtaaactcaggtaaattcacaataat |
2170 |
T |
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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 166 - 291
Target Start/End: Original strand, 6075774 - 6075888
Alignment:
| Q |
166 |
ataagagcattattctctagttcaattgtaagatatataatctttacttgttaaggagatcatcctataatatattgtgagcataaagcattggtttgtt |
265 |
Q |
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| T |
6075774 |
ataagagcattattctcaagttcaattgtaa---------tctttacttgttaaggaga--atcctataatatattgtgagcataaagcattggtttgtt |
6075862 |
T |
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| Q |
266 |
aacagaattaatagaggaccattttt |
291 |
Q |
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| T |
6075863 |
accagaattaacagaggaccattttt |
6075888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 303
Target Start/End: Complemental strand, 5688996 - 5688920
Alignment:
| Q |
231 |
tataatatattgtgagcataaagcattggtttgttaac---agaattaatagaggaccatttttctg-caattacta |
303 |
Q |
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| T |
5688996 |
tataatatattgtgagcataaagcattggtttgttaccagaagaattaatagaggaccatttttgtgccaattacta |
5688920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 5696333 - 5696293
Alignment:
| Q |
166 |
ataagagcattattctctagttcaattgtaagatatataat |
206 |
Q |
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| T |
5696333 |
ataagagcattattctcaagttcaattgtaagatatataat |
5696293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 67
Target Start/End: Complemental strand, 5697105 - 5697046
Alignment:
| Q |
7 |
tgaaatgaaactgaatttactcaattgaacttgtagtgaacttggtaaactcaggaaaatt |
67 |
Q |
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| T |
5697105 |
tgaaatgaaac-gagtttactcaattgaacttgtagtgaatttggtaaacacaggtaaatt |
5697046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 343
Target Start/End: Original strand, 6075950 - 6075989
Alignment:
| Q |
304 |
gatttggatcacagttaagctatcgtgaggaatgcaaatt |
343 |
Q |
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| T |
6075950 |
gatttggatcacagttaggctatcgtgaggaatgcaaatt |
6075989 |
T |
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